{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,8,5]],"date-time":"2025-08-05T12:17:55Z","timestamp":1754396275658},"reference-count":17,"publisher":"Oxford University Press (OUP)","issue":"23","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2016,12,1]]},"abstract":"<jats:p>Summary: With decreasing costs of generating DNA sequence data, genome and metagenome projects have become accessible to a wider scientific community. However, to extract meaningful information and visualize the data remain challenging. We here introduce FARAO, a highly scalable software for organization, visualization and integration of annotation and read coverage data that can also combine output data from several bioinformatics tools. The capabilities of FARAO can greatly aid analyses of genomic and metagenomic datasets.<\/jats:p>\n               <jats:p>Availability and Implementation: FARAO is implemented in Perl and is supported under Unix-like operative systems, including Linux and macOS. The Perl source code is freely available for download under the MIT License from http:\/\/microbiology.se\/software\/farao\/.<\/jats:p>\n               <jats:p>Contact: \u00a0johan.bengtsson-palme@microbiology.se<\/jats:p>\n               <jats:p>Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btw499","type":"journal-article","created":{"date-parts":[[2016,8,5]],"date-time":"2016-08-05T01:54:16Z","timestamp":1470362056000},"page":"3664-3666","source":"Crossref","is-referenced-by-count":7,"title":["FARAO: the flexible all-round annotation organizer"],"prefix":"10.1093","volume":"32","author":[{"given":"Rickard","family":"Hammar\u00e9n","sequence":"first","affiliation":[{"name":"1Department of Infectious Diseases, Institute of Biomedicine, The Sahlgrenska Academy, University of Gothenburg, Guldhedsgatan 10, SE-413 46, Gothenburg, Sweden"},{"name":"2Science for Life Laboratory, Department of Medical Epidemiology and Biostatistics, Karolinska Institute, SE-171 21 Solna, Stockholm, Sweden"}]},{"given":"Chandan","family":"Pal","sequence":"additional","affiliation":[{"name":"1Department of Infectious Diseases, Institute of Biomedicine, The Sahlgrenska Academy, University of Gothenburg, Guldhedsgatan 10, SE-413 46, Gothenburg, Sweden"},{"name":"3Centre for Antibiotic Resistance Research (CARe) at University of Gothenburg, Gothenburg, Sweden"}]},{"given":"Johan","family":"Bengtsson-Palme","sequence":"additional","affiliation":[{"name":"1Department of Infectious Diseases, Institute of Biomedicine, The Sahlgrenska Academy, University of Gothenburg, Guldhedsgatan 10, SE-413 46, Gothenburg, Sweden"},{"name":"3Centre for Antibiotic Resistance Research (CARe) at University of Gothenburg, Gothenburg, Sweden"}]}],"member":"286","published-online":{"date-parts":[[2016,8,4]]},"reference":[{"key":"2023020114083065500_btw499-B1","doi-asserted-by":"crossref","first-page":"648","DOI":"10.3389\/fmicb.2014.00648","article-title":"Shotgun metagenomics reveals a wide array of antibiotic resistance genes and mobile elements in a polluted lake in India","volume":"5","author":"Bengtsson-Palme","year":"2014","journal-title":"Front. 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