{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,7]],"date-time":"2026-04-07T09:35:51Z","timestamp":1775554551030,"version":"3.50.1"},"reference-count":8,"publisher":"Oxford University Press (OUP)","issue":"12","license":[{"start":{"date-parts":[[2017,2,16]],"date-time":"2017-02-16T00:00:00Z","timestamp":1487203200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/academic.oup.com\/journals\/pages\/about_us\/legal\/notices"}],"funder":[{"DOI":"10.13039\/501100001706","name":"Louis Jeantet Foundation","doi-asserted-by":"crossref","id":[{"id":"10.13039\/501100001706","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/501100001711","name":"Swiss National Science Foundation","doi-asserted-by":"crossref","id":[{"id":"10.13039\/501100001711","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/501100001711","name":"Swiss National Science Foundation SystemsX","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100001711","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000002","name":"National Institute of Health","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Swiss National Science Foundation Ambizione"},{"DOI":"10.13039\/501100001711","name":"Swiss National Science Foundation","doi-asserted-by":"crossref","id":[{"id":"10.13039\/501100001711","id-type":"DOI","asserted-by":"crossref"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2017,6,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:sec>\n                  <jats:title>Motivation<\/jats:title>\n                  <jats:p>Large genomic datasets combining genotype and sequence data, such as for expression quantitative trait loci (eQTL) detection, require perfect matching between both data types.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Results<\/jats:title>\n                  <jats:p>We described here MBV (Match BAM to VCF); a method to quickly solve sample mislabeling and detect cross-sample contamination and PCR amplification bias.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Availability and Implementation<\/jats:title>\n                  <jats:p>MBV is implemented in C\u2009++\u2009as an independent component of the QTLtools software package, the binary and source codes are freely available at https:\/\/qtltools.github.io\/qtltools\/.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Supplementary information<\/jats:title>\n                  <jats:p>Supplementary data are available at Bioinformatics online.<\/jats:p>\n               <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btx074","type":"journal-article","created":{"date-parts":[[2017,2,10]],"date-time":"2017-02-10T10:41:30Z","timestamp":1486723290000},"page":"1895-1897","source":"Crossref","is-referenced-by-count":65,"title":["<i>MBV<\/i>: a method to solve sample mislabeling and detect technical bias in large combined genotype and sequencing assay datasets"],"prefix":"10.1093","volume":"33","author":[{"given":"Alexandre","family":"Fort","sequence":"first","affiliation":[{"name":"Department of Genetic Medicine and Development, University of Geneva Medical School, Geneva, Switzerland"}]},{"given":"Nikolaos I","family":"Panousis","sequence":"additional","affiliation":[{"name":"Department of Genetic Medicine and Development, University of Geneva Medical School, Geneva, Switzerland"},{"name":"Swiss Institute of Bioinformatics, Lausanne, Switzerland"},{"name":"Institute of Genetics and Genomics in Geneva, Geneva, Switzerland"}]},{"given":"Marco","family":"Garieri","sequence":"additional","affiliation":[{"name":"Department of Genetic Medicine and Development, University of Geneva Medical School, Geneva, Switzerland"},{"name":"Swiss Institute of Bioinformatics, Lausanne, Switzerland"},{"name":"Institute of Genetics and Genomics in Geneva, Geneva, Switzerland"}]},{"given":"Stylianos E","family":"Antonarakis","sequence":"additional","affiliation":[{"name":"Department of Genetic Medicine and Development, University of Geneva Medical School, Geneva, Switzerland"},{"name":"Institute of Genetics and Genomics in Geneva, Geneva, Switzerland"}]},{"given":"Tuuli","family":"Lappalainen","sequence":"additional","affiliation":[{"name":"New York Genome Center, New York, USA"},{"name":"Department of Systems Biology, Columbia University, New York, USA"}]},{"given":"Emmanouil T","family":"Dermitzakis","sequence":"additional","affiliation":[{"name":"Department of Genetic Medicine and Development, University of Geneva Medical School, Geneva, Switzerland"},{"name":"Swiss Institute of Bioinformatics, Lausanne, Switzerland"},{"name":"Institute of Genetics and Genomics in Geneva, Geneva, Switzerland"}]},{"given":"Olivier","family":"Delaneau","sequence":"additional","affiliation":[{"name":"Department of Genetic Medicine and Development, University of Geneva Medical School, Geneva, Switzerland"},{"name":"Swiss Institute of Bioinformatics, Lausanne, Switzerland"},{"name":"Institute of Genetics and Genomics in Geneva, Geneva, Switzerland"}]}],"member":"286","published-online":{"date-parts":[[2017,2,16]]},"reference":[{"key":"2023020205491460900_btx074-B1","doi-asserted-by":"crossref","first-page":"195.","DOI":"10.1186\/s13059-015-0762-6","article-title":"Tools and best practice for data processing in allelic expression analysis","volume":"16","author":"Castel","year":"2015","journal-title":"Genome Biol"},{"key":"2023020205491460900_btx074-B2","doi-asserted-by":"crossref","first-page":"1015","DOI":"10.1038\/nbt.2702","article-title":"Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories","volume":"31","author":"Hoen","year":"2013","journal-title":"Nat. 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