{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,11]],"date-time":"2026-01-11T11:55:21Z","timestamp":1768132521740,"version":"3.49.0"},"reference-count":8,"publisher":"Oxford University Press (OUP)","issue":"14","license":[{"start":{"date-parts":[[2017,3,24]],"date-time":"2017-03-24T00:00:00Z","timestamp":1490313600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/academic.oup.com\/journals\/pages\/about_us\/legal\/notices"}],"funder":[{"DOI":"10.13039\/501100001665","name":"Agence Nationale de la Recherche","doi-asserted-by":"publisher","award":["ANR-10-INBS-09"],"award-info":[{"award-number":["ANR-10-INBS-09"]}],"id":[{"id":"10.13039\/501100001665","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2017,7,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:sec>\n                  <jats:title>Motivation<\/jats:title>\n                  <jats:p>Data management and quality control of output from Illumina sequencers is a disk space- and time-consuming task. Thus, we developed Aozan to automatically handle data transfer, demultiplexing, conversion and quality control once a run has finished. This software greatly improves run data management and the monitoring of run statistics via automatic emails and HTML web reports.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Availability and Implementation<\/jats:title>\n                  <jats:p>Aozan is implemented in Java and Python, supported on Linux systems, and distributed under the GPLv3 License at: http:\/\/www.outils.genomique.biologie.ens.fr\/aozan\/. Aozan source code is available on GitHub: https:\/\/github.com\/GenomicParisCentre\/aozan.<\/jats:p>\n               <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btx154","type":"journal-article","created":{"date-parts":[[2017,3,20]],"date-time":"2017-03-20T20:12:48Z","timestamp":1490040768000},"page":"2212-2213","source":"Crossref","is-referenced-by-count":18,"title":["Aozan: an automated post-sequencing data-processing pipeline"],"prefix":"10.1093","volume":"33","author":[{"given":"Sandrine","family":"Perrin","sequence":"first","affiliation":[{"name":"\u00c9cole Normale Sup\u00e9rieure, PSL Research University, CNRS, Inserm, Institut de Biologie de l\u2019\u00c9cole Normale Sup\u00e9rieure (IBENS), Plateforme G\u00e9nomique, Paris, France"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Cyril","family":"Firmo","sequence":"additional","affiliation":[{"name":"\u00c9cole Normale Sup\u00e9rieure, PSL Research University, CNRS, Inserm, Institut de Biologie de l\u2019\u00c9cole Normale Sup\u00e9rieure (IBENS), Plateforme G\u00e9nomique, Paris, France"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sophie","family":"Lemoine","sequence":"additional","affiliation":[{"name":"\u00c9cole Normale Sup\u00e9rieure, PSL Research University, CNRS, Inserm, Institut de Biologie de l\u2019\u00c9cole Normale Sup\u00e9rieure (IBENS), Plateforme G\u00e9nomique, Paris, France"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"St\u00e9phane","family":"Le Crom","sequence":"additional","affiliation":[{"name":"\u00c9cole Normale Sup\u00e9rieure, PSL Research University, CNRS, Inserm, Institut de Biologie de l\u2019\u00c9cole Normale Sup\u00e9rieure (IBENS), Plateforme G\u00e9nomique, Paris, France"},{"name":"Sorbonne Universit\u00e9s, UPMC Univ Paris 06, Univ Antilles, Univ Nice Sophia Antipolis, CNRS, Evolution Paris Seine \u2013 Institut de Biologie Paris Seine (EPS \u2013 IBPS), Paris, France"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Laurent","family":"Jourdren","sequence":"additional","affiliation":[{"name":"\u00c9cole Normale Sup\u00e9rieure, PSL Research University, CNRS, Inserm, Institut de Biologie de l\u2019\u00c9cole Normale Sup\u00e9rieure (IBENS), Plateforme G\u00e9nomique, Paris, France"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2017,3,24]]},"reference":[{"key":"2023051506471138900_btx154-B1","doi-asserted-by":"crossref","first-page":"403","DOI":"10.1016\/S0022-2836(05)80360-2","article-title":"Basic local alignment search tool","volume":"215","author":"Altschul","year":"1990","journal-title":"J. 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