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Users can upload viral genomes sequenced either by genomics or metagenomics. ViPTree generates proteomic trees for the uploaded genomes together with flexibly selected reference viral genomes. ViPTree also serves as a platform to visually investigate genomic alignments and automatically annotated gene functions for the uploaded viral genomes, thus providing virus researchers the first choice for classifying and understanding newly sequenced viral genomes.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Availability and Implementation<\/jats:title>\n                    <jats:p>ViPTree is freely available at: http:\/\/www.genome.jp\/viptree.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Supplementary information<\/jats:title>\n                    <jats:p>Supplementary data are available at Bioinformatics online.<\/jats:p>\n                  <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btx157","type":"journal-article","created":{"date-parts":[[2017,3,21]],"date-time":"2017-03-21T15:01:36Z","timestamp":1490108496000},"page":"2379-2380","source":"Crossref","is-referenced-by-count":1011,"title":["ViPTree: the viral proteomic tree server"],"prefix":"10.1093","volume":"33","author":[{"given":"Yosuke","family":"Nishimura","sequence":"first","affiliation":[{"name":"Institute for Chemical Research, Kyoto University, Uji, Kyoto, Japan"},{"name":"Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwake, Sakyo-ku, Kyoto, Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Takashi","family":"Yoshida","sequence":"additional","affiliation":[{"name":"Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwake, Sakyo-ku, Kyoto, Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Megumi","family":"Kuronishi","sequence":"additional","affiliation":[{"name":"Institute for Chemical Research, Kyoto University, Uji, Kyoto, Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Hideya","family":"Uehara","sequence":"additional","affiliation":[{"name":"SGI Japan, Ltd., Yebisu Garden Place Tower 31F, 4-20-3 Ebisu, Shibuya-ku, Tokyo, Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Hiroyuki","family":"Ogata","sequence":"additional","affiliation":[{"name":"Institute for Chemical Research, Kyoto University, Uji, Kyoto, Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Susumu","family":"Goto","sequence":"additional","affiliation":[{"name":"Institute for Chemical Research, Kyoto University, Uji, Kyoto, Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2017,3,30]]},"reference":[{"key":"2023063012500207100_btx157-B1","doi-asserted-by":"crossref","first-page":"144","DOI":"10.1016\/j.virol.2014.10.016","article-title":"Integration of genomic and proteomic analyses in the classification of the Siphoviridae family","volume":"477","author":"Adriaenssens","year":"2015","journal-title":"Virology"},{"key":"2023063012500207100_btx157-B2","doi-asserted-by":"crossref","first-page":"656","DOI":"10.3389\/fmicb.2015.00656","article-title":"Analysis of virus genomes from glacial environments reveals novel virus groups with unusual host interactions","volume":"6","author":"Bellas","year":"2015","journal-title":"Front. 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