{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,9]],"date-time":"2026-01-09T19:37:23Z","timestamp":1767987443265,"version":"3.49.0"},"reference-count":8,"publisher":"Oxford University Press (OUP)","issue":"22","license":[{"start":{"date-parts":[[2017,7,24]],"date-time":"2017-07-24T00:00:00Z","timestamp":1500854400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/academic.oup.com\/journals\/pages\/about_us\/legal\/notices"}],"funder":[{"DOI":"10.13039\/100009950","name":"Ministry of Education","doi-asserted-by":"publisher","award":["CEITEC 2020: LQ1601"],"award-info":[{"award-number":["CEITEC 2020: LQ1601"]}],"id":[{"id":"10.13039\/100009950","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2017,11,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:sec>\n                  <jats:title>Summary<\/jats:title>\n                  <jats:p>CrocoBLAST is a tool for dramatically speeding up BLAST+ execution on any computer. Alignments that would take days or weeks with NCBI BLAST+ can be run overnight with CrocoBLAST. Additionally, CrocoBLAST provides features critical for NGS data analysis, including: results identical to those of BLAST+; compatibility with any BLAST+ version; real-time information regarding calculation progress and remaining run time; access to partial alignment results; queueing, pausing, and resuming BLAST+ calculations without information loss.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Availability and implementation<\/jats:title>\n                  <jats:p>CrocoBLAST is freely available online, with ample documentation (webchem.ncbr.muni.cz\/Platform\/App\/CrocoBLAST). No installation or user registration is required. CrocoBLAST is implemented in C, while the graphical user interface is implemented in Java. CrocoBLAST is supported under Linux and Windows, and can be run under Mac OS X in a Linux virtual machine.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Supplementary information<\/jats:title>\n                  <jats:p>Supplementary data are available at Bioinformatics online.<\/jats:p>\n               <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btx465","type":"journal-article","created":{"date-parts":[[2017,7,21]],"date-time":"2017-07-21T11:08:42Z","timestamp":1500635322000},"page":"3648-3651","source":"Crossref","is-referenced-by-count":4,"title":["CrocoBLAST: Running BLAST efficiently in the age of next-generation sequencing"],"prefix":"10.1093","volume":"33","author":[{"given":"Ravi Jos\u00e9","family":"Trist\u00e3o Ramos","sequence":"first","affiliation":[{"name":"CEITEC-Central European Institute of Technology, Masaryk University, Masaryk University, Brno, Czech Republic"},{"name":"National Centre for Biomolecular Research, Masaryk University, Brno, Czech Republic"},{"name":"Biophysics Institute, Federal University of Rio de Janeiro, Rio de Janeiro, RJ, Brazil"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Allan C\u00e9zar","family":"de Azevedo Martins","sequence":"additional","affiliation":[{"name":"Biophysics Institute, Federal University of Rio de Janeiro, Rio de Janeiro, RJ, Brazil"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Gabrielle","family":"da Silva Delgado","sequence":"additional","affiliation":[{"name":"Biophysics Institute, Federal University of Rio de Janeiro, Rio de Janeiro, RJ, Brazil"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Crina-Maria","family":"Ionescu","sequence":"additional","affiliation":[{"name":"CEITEC-Central European Institute of Technology, Masaryk University, Masaryk University, Brno, Czech Republic"},{"name":"National Centre for Biomolecular Research, Masaryk University, Brno, Czech Republic"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Tur\u00e1n Peter","family":"\u00dcrm\u00e9nyi","sequence":"additional","affiliation":[{"name":"Biophysics Institute, Federal University of Rio de Janeiro, Rio de Janeiro, RJ, Brazil"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Rosane","family":"Silva","sequence":"additional","affiliation":[{"name":"Biophysics Institute, Federal University of Rio de Janeiro, Rio de Janeiro, RJ, Brazil"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jaroslav","family":"Ko\u010da","sequence":"additional","affiliation":[{"name":"CEITEC-Central European Institute of Technology, Masaryk University, Masaryk University, Brno, Czech Republic"},{"name":"National Centre for Biomolecular Research, Masaryk University, Brno, Czech Republic"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2017,7,24]]},"reference":[{"key":"2023051308382142600_btx465-B1","doi-asserted-by":"crossref","first-page":"403","DOI":"10.1016\/S0022-2836(05)80360-2","article-title":"Basic local alignment search tool","volume":"215","author":"Altschul","year":"1990","journal-title":"J. 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