{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,11]],"date-time":"2026-03-11T16:35:20Z","timestamp":1773246920087,"version":"3.50.1"},"reference-count":8,"publisher":"Oxford University Press (OUP)","issue":"23","license":[{"start":{"date-parts":[[2017,8,14]],"date-time":"2017-08-14T00:00:00Z","timestamp":1502668800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/academic.oup.com\/journals\/pages\/about_us\/legal\/notices"}],"funder":[{"DOI":"10.13039\/501100004281","name":"National Science Centre","doi-asserted-by":"publisher","award":["#2012\/07\/E\/NZ1\/01900"],"award-info":[{"award-number":["#2012\/07\/E\/NZ1\/01900"]}],"id":[{"id":"10.13039\/501100004281","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100004281","name":"National Science Centre","doi-asserted-by":"publisher","award":["#2016\/21\/N\/NZ1\/02848"],"award-info":[{"award-number":["#2016\/21\/N\/NZ1\/02848"]}],"id":[{"id":"10.13039\/501100004281","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100004410","name":"European Molecular Biology Organization","doi-asserted-by":"publisher","award":["#2057"],"award-info":[{"award-number":["#2057"]}],"id":[{"id":"10.13039\/100004410","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2017,12,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:sec>\n                  <jats:title>Summary<\/jats:title>\n                  <jats:p>Entanglement in macromolecules is an important phenomenon and a subject of multidisciplinary research. As recently discovered, around 4% of proteins form new entangled motifs, called lassos. Here we present the PyLasso\u2014a PyMOL plugin to identify and analyse properties of lassos in proteins and other (bio)polymers, as well as in other biological, physical and mathematical systems. The PyLasso is a useful tool for all researchers working on modeling of macromolecules, structure prediction, properties of polymers, entanglement in fluids and fields, etc.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Availability and implementation<\/jats:title>\n                  <jats:p>The PyLasso and tutorial videos are available at http:\/\/pylasso.cent.uw.edu.pl<\/jats:p>\n               <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btx493","type":"journal-article","created":{"date-parts":[[2017,8,9]],"date-time":"2017-08-09T19:13:47Z","timestamp":1502306027000},"page":"3819-3821","source":"Crossref","is-referenced-by-count":23,"title":["PyLasso: a PyMOL plugin to identify lassos"],"prefix":"10.1093","volume":"33","author":[{"given":"Aleksandra M","family":"Gierut","sequence":"first","affiliation":[{"name":"Centre of New Technologies, University of Warsaw, Banacha 2c, Warsaw, Poland"},{"name":"Faculty of Physics, Astronomy and Applied Computer Science, Jagiellonian University, \u0141ojasiewicza 11, Cracow, Poland"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Wanda","family":"Niemyska","sequence":"additional","affiliation":[{"name":"Centre of New Technologies, University of Warsaw, Banacha 2c, Warsaw, Poland"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Pawel","family":"Dabrowski-Tumanski","sequence":"additional","affiliation":[{"name":"Centre of New Technologies, University of Warsaw, Banacha 2c, Warsaw, Poland"},{"name":"Faculty of Chemistry, University of Warsaw, Pasteura 1, Warsaw, Poland"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Piotr","family":"Su\u0142kowski","sequence":"additional","affiliation":[{"name":"Faculty of Physics, University of Warsaw, Pasteura 5, Warsaw, Poland"},{"name":"Walter Burke Institute for Theoretical Physics, California Institute of Technology, Pasadena, CA, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Joanna I","family":"Sulkowska","sequence":"additional","affiliation":[{"name":"Centre of New Technologies, University of Warsaw, Banacha 2c, Warsaw, Poland"},{"name":"Faculty of Chemistry, University of Warsaw, Pasteura 1, Warsaw, Poland"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2017,8,14]]},"reference":[{"key":"2023020207011159800_btx493-B1","doi-asserted-by":"crossref","first-page":"508","DOI":"10.3722\/cadaps.2008.508-518","article-title":"Constructing triangular meshes of minimal area","volume":"5","author":"Chen","year":"2008","journal-title":"Comput Aided Des. 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