{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,2,22]],"date-time":"2025-02-22T00:45:04Z","timestamp":1740185104813,"version":"3.37.3"},"reference-count":5,"publisher":"Oxford University Press (OUP)","issue":"2","license":[{"start":{"date-parts":[[2017,9,23]],"date-time":"2017-09-23T00:00:00Z","timestamp":1506124800000},"content-version":"vor","delay-in-days":1,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/4.0\/"}],"funder":[{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000060","name":"NIAID","doi-asserted-by":"publisher","award":["R01-AI1096159","R21-AI121933"],"award-info":[{"award-number":["R01-AI1096159","R21-AI121933"]}],"id":[{"id":"10.13039\/100000060","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000002","name":"NIH","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2018,1,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:sec>\n                  <jats:title>Summary<\/jats:title>\n                  <jats:p>High-throughput screening of the host transcriptional response to various viral infections provides a wealth of data, but utilization of microarray and next generation sequencing (NGS) data for analysis can be difficult. The Host Transcriptional Response DataBase (HoTResDB), allows visitors to access already processed microarray and NGS data from non-human primate models of viral hemorrhagic fever to better understand the host transcriptional response.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Availability<\/jats:title>\n                  <jats:p>HoTResDB is freely available at http:\/\/hotresdb.bu.edu<\/jats:p>\n               <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btx599","type":"journal-article","created":{"date-parts":[[2017,9,19]],"date-time":"2017-09-19T19:18:11Z","timestamp":1505848691000},"page":"321-322","source":"Crossref","is-referenced-by-count":1,"title":["HoTResDB: host transcriptional response database for viral hemorrhagic fevers"],"prefix":"10.1093","volume":"34","author":[{"given":"Jonathan","family":"Lo","sequence":"first","affiliation":[{"name":"Bioinformatics Program, Boston University, 24 Cummington Mall, Boston, MA, USA"}]},{"given":"Deric","family":"Zhang","sequence":"additional","affiliation":[{"name":"Bioinformatics Program, Boston University, 24 Cummington Mall, Boston, MA, USA"}]},{"given":"Emily","family":"Speranza","sequence":"additional","affiliation":[{"name":"Bioinformatics Program, Boston University, 24 Cummington Mall, Boston, MA, USA"},{"name":"Department of Microbiology, National Emerging Infectious Diseases Laboratories (NEIDL), Boston Univeristy, 620 Albany St, Boston, MA, USA"}]},{"given":"Jose A","family":"Negron","sequence":"additional","affiliation":[{"name":"Bioinformatics Program, Boston University, 24 Cummington Mall, Boston, MA, USA"}]},{"given":"John H","family":"Connor","sequence":"additional","affiliation":[{"name":"Bioinformatics Program, Boston University, 24 Cummington Mall, Boston, MA, USA"},{"name":"Department of Microbiology, National Emerging Infectious Diseases Laboratories (NEIDL), Boston Univeristy, 620 Albany St, Boston, MA, USA"}]}],"member":"286","published-online":{"date-parts":[[2017,9,22]]},"reference":[{"key":"2023012712240146500_btx599-B1","first-page":"960","article-title":"Lassa and Marburg viruses elicit distinct host transcriptional responses early after infection","volume-title":"BMC Genomics","author":"Caballero","year":"2014"},{"key":"2023012712240146500_btx599-B2","doi-asserted-by":"crossref","first-page":"707","DOI":"10.1186\/s12864-016-3060-0","article-title":"In vivo Ebola virus infection leads to a strong innate response in circulating immune cells","volume":"17","author":"Caballero","year":"2016","journal-title":"BMC Genomics"},{"key":"2023012712240146500_btx599-B3","doi-asserted-by":"crossref","first-page":"e47.","DOI":"10.1093\/nar\/gkv007","article-title":"Limma powers differential expression analyses for RNA-sequencing and microarray studies","volume":"43","author":"Ritchie","year":"2015","journal-title":"Nucleic Acids Res"},{"key":"2023012712240146500_btx599-B4","doi-asserted-by":"crossref","first-page":"139","DOI":"10.1093\/bioinformatics\/btp616","article-title":"edgeR: a bioconductor package for differential expression analysis of digital gene expression data","volume":"26","author":"Robinson","year":"2010","journal-title":"Bioinformatics"},{"key":"2023012712240146500_btx599-B5","doi-asserted-by":"crossref","DOI":"10.1093\/infdis\/jir345","article-title":"Therapeutics of Ebola hemorrhagic fever: whole-genome transcriptional analysis of successful disease mitigation","author":"Yen","year":"2011","journal-title":"J. Infectious Dis"}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/34\/2\/321\/48913223\/bioinformatics_34_2_321.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/34\/2\/321\/48913223\/bioinformatics_34_2_321.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,27]],"date-time":"2023-01-27T13:07:58Z","timestamp":1674824878000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/34\/2\/321\/4209991"}},"subtitle":[],"editor":[{"given":"Janet","family":"Kelso","sequence":"additional","affiliation":[]}],"short-title":[],"issued":{"date-parts":[[2017,9,22]]},"references-count":5,"journal-issue":{"issue":"2","published-print":{"date-parts":[[2018,1,15]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btx599","relation":{},"ISSN":["1367-4803","1367-4811"],"issn-type":[{"type":"print","value":"1367-4803"},{"type":"electronic","value":"1367-4811"}],"subject":[],"published-other":{"date-parts":[[2018,1,15]]},"published":{"date-parts":[[2017,9,22]]}}}