{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,2,22]],"date-time":"2025-02-22T00:45:14Z","timestamp":1740185114368,"version":"3.37.3"},"reference-count":6,"publisher":"Oxford University Press (OUP)","issue":"6","license":[{"start":{"date-parts":[[2017,11,3]],"date-time":"2017-11-03T00:00:00Z","timestamp":1509667200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/academic.oup.com\/journals\/pages\/about_us\/legal\/notices"}],"funder":[{"DOI":"10.13039\/501100004901","name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de Minas Gerais","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100004901","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100004901","name":"FAPEMIG","doi-asserted-by":"publisher","award":["APQ-02387-14, APQ\u201400828-14"],"award-info":[{"award-number":["APQ-02387-14, APQ\u201400828-14"]}],"id":[{"id":"10.13039\/501100004901","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2018,3,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:sec>\n                  <jats:title>Motivation<\/jats:title>\n                  <jats:p>Information about metabolic pathways in a comparative context is one of the most powerful tool to help the understanding of genome-based differences in phenotypes among organisms. Although several platforms exist that provide a wealth of information on metabolic pathways of diverse organisms, the comparison among organisms using metabolic pathways is still a difficult task.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Results<\/jats:title>\n                  <jats:p>We present TabPath (Tables for Metabolic Pathway), a web-based tool to facilitate comparison of metabolic pathways in genomes based on KEGG. From a selection of pathways and genomes of interest on the menu, TabPath generates user-friendly tables that facilitate analysis of variations in metabolism among the selected organisms.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Availability and implementation<\/jats:title>\n                  <jats:p>TabPath is available at http:\/\/200.239.132.160:8686.<\/jats:p>\n               <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btx714","type":"journal-article","created":{"date-parts":[[2017,11,2]],"date-time":"2017-11-02T12:14:22Z","timestamp":1509624862000},"page":"1040-1042","source":"Crossref","is-referenced-by-count":2,"title":["TabPath: interactive tables for metabolic pathway analysis"],"prefix":"10.1093","volume":"34","author":[{"given":"Lauro \u00c2ngelo Gon\u00e7alves de","family":"Moraes","sequence":"first","affiliation":[{"name":"Laborat\u00f3rio Multiusu\u00e1rio de Bioinform\u00e1tica, N\u00facleo de Pesquisas em Ci\u00eancias Biol\u00f3gicas, Universidade Federal de Ouro Preto, Ouro Preto, MG, Brazil"},{"name":"Departamento de Computa\u00e7\u00e3o, Universidade Federal de Ouro Preto, Ouro Preto, MG, Brazil"}]},{"given":"\u00c9rica Barbosa","family":"Felestrino","sequence":"additional","affiliation":[{"name":"N\u00facleo de Pesquisas em Ci\u00eancias Biol\u00f3gicas, Universidade Federal de Ouro Preto, Ouro Preto, MG, Brazil"}]},{"given":"Renata de Almeida Barbosa","family":"Assis","sequence":"additional","affiliation":[{"name":"N\u00facleo de Pesquisas em Ci\u00eancias Biol\u00f3gicas, Universidade Federal de Ouro Preto, Ouro Preto, MG, Brazil"}]},{"given":"Diogo","family":"Matos","sequence":"additional","affiliation":[{"name":"Laborat\u00f3rio Multiusu\u00e1rio de Bioinform\u00e1tica, N\u00facleo de Pesquisas em Ci\u00eancias Biol\u00f3gicas, Universidade Federal de Ouro Preto, Ouro Preto, MG, Brazil"}]},{"given":"Joubert de Castro","family":"Lima","sequence":"additional","affiliation":[{"name":"Departamento de Computa\u00e7\u00e3o, Universidade Federal de Ouro Preto, Ouro Preto, MG, Brazil"}]},{"given":"Leandro de Ara\u00fajo","family":"Lima","sequence":"additional","affiliation":[{"name":"Gladstone Institute of Neurological Disease, San Francisco, CA, USA"}]},{"given":"Nalvo Franco","family":"Almeida","sequence":"additional","affiliation":[{"name":"Faculdade de Computa\u00e7\u00e3o, Universidade Federal do Mato Grosso do Sul, Mato Grosso do Sul, MS, Brazil"}]},{"given":"Jo\u00e3o Carlos","family":"Setubal","sequence":"additional","affiliation":[{"name":"Departamento de Bioqu\u00edmica, Instituto de Qu\u00edmica, Universidade de S\u00e3o Paulo, S\u00e3o Paulo, Brazil"}]},{"given":"Camila Carri\u00e3o Machado","family":"Garcia","sequence":"additional","affiliation":[{"name":"N\u00facleo de Pesquisas em Ci\u00eancias Biol\u00f3gicas, Universidade Federal de Ouro Preto, Ouro Preto, MG, Brazil"},{"name":"Departamento de Ci\u00eancias Biol\u00f3gicas, Universidade Federal de Ouro Preto, Ouro Preto, MG, Brazil"}]},{"given":"Leandro Marcio","family":"Moreira","sequence":"additional","affiliation":[{"name":"Laborat\u00f3rio Multiusu\u00e1rio de Bioinform\u00e1tica, N\u00facleo de Pesquisas em Ci\u00eancias Biol\u00f3gicas, Universidade Federal de Ouro Preto, Ouro Preto, MG, Brazil"},{"name":"N\u00facleo de Pesquisas em Ci\u00eancias Biol\u00f3gicas, Universidade Federal de Ouro Preto, Ouro Preto, MG, Brazil"},{"name":"Departamento de Ci\u00eancias Biol\u00f3gicas, Universidade Federal de Ouro Preto, Ouro Preto, MG, Brazil"}]}],"member":"286","published-online":{"date-parts":[[2017,11,3]]},"reference":[{"key":"2023012712472694600_btx714-B1","doi-asserted-by":"crossref","first-page":"1063","DOI":"10.1101\/gr.157503.113","article-title":"Comparative genomics as a tool to understand evolution and disease","volume":"23","author":"Alfoldi","year":"2013","journal-title":"Genome Res"},{"key":"2023012712472694600_btx714-B2","doi-asserted-by":"crossref","first-page":"511","DOI":"10.1093\/nar\/gkj128","article-title":"MetaCyc: a multiorganism database of metabolic pathways and enzymes","volume":"34","author":"Caspi","year":"2006","journal-title":"Nucleic Acids Res"},{"key":"2023012712472694600_btx714-B3","doi-asserted-by":"crossref","first-page":"663","DOI":"10.1128\/AEM.02809-12","article-title":"Comparative genomic analysis and benzene, toluene, ethylbenzene, and o-, m-, and p-xylene (BTEX) degradation pathways of Pseudoxanthomonas spadix BD-a59","volume":"79","author":"Choi","year":"2013","journal-title":"Environ. Microbiol"},{"key":"2023012712472694600_btx714-B4","doi-asserted-by":"crossref","first-page":"27","DOI":"10.1093\/nar\/28.1.27","article-title":"KEGG: kyoto encyclopedia of genes and genomes","volume":"28","author":"Kanehisa","year":"2000","journal-title":"Nucleic Acids Res"},{"key":"2023012712472694600_btx714-B5","doi-asserted-by":"crossref","first-page":"624","DOI":"10.1038\/nrg.2017.51","article-title":"Dissecting evolution and disease using comparative vertebrate genomics","volume":"18","author":"Meadows","year":"2017","journal-title":"Nat. Rev. Genet"},{"key":"2023012712472694600_btx714-B6","doi-asserted-by":"crossref","first-page":"18456","DOI":"10.1038\/srep18456","article-title":"A functional 4-hydroxybenzoate degradation pathway in the phytopathogen Xanthomonas campestris is required for full pathogenicity","volume":"5","author":"Wang","year":"2016","journal-title":"Sci. Rep"}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/34\/6\/1040\/48914369\/bioinformatics_34_6_1040.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/34\/6\/1040\/48914369\/bioinformatics_34_6_1040.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,27]],"date-time":"2023-01-27T13:39:55Z","timestamp":1674826795000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/34\/6\/1040\/4590028"}},"subtitle":[],"editor":[{"given":"John","family":"Hancock","sequence":"additional","affiliation":[]}],"short-title":[],"issued":{"date-parts":[[2017,11,3]]},"references-count":6,"journal-issue":{"issue":"6","published-print":{"date-parts":[[2018,3,15]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btx714","relation":{},"ISSN":["1367-4803","1367-4811"],"issn-type":[{"type":"print","value":"1367-4803"},{"type":"electronic","value":"1367-4811"}],"subject":[],"published-other":{"date-parts":[[2018,3,15]]},"published":{"date-parts":[[2017,11,3]]}}}