{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,23]],"date-time":"2026-06-23T01:44:40Z","timestamp":1782179080627,"version":"3.54.5"},"reference-count":7,"publisher":"Oxford University Press (OUP)","issue":"7","license":[{"start":{"date-parts":[[2017,11,24]],"date-time":"2017-11-24T00:00:00Z","timestamp":1511481600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/academic.oup.com\/journals\/pages\/about_us\/legal\/notices"}],"funder":[{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["31771873 and 31371599"],"award-info":[{"award-number":["31771873 and 31371599"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2018,4,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:sec>\n                  <jats:title>Summary<\/jats:title>\n                  <jats:p>Creation of Circos plot is one of the most efficient approaches to visualize genomic data. However, the installation and use of existing tools to make Circos plot are challenging for users lacking of coding experiences. To address this issue, we developed an R\/Shiny application shinyCircos, a graphical user interface for interactive creation of Circos plot. shinyCircos can be easily installed either on computers for personal use or on local or public servers to provide online use to the community. Furthermore, various types of Circos plots could be easily generated and decorated with simple mouse-click.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Availability and implementation<\/jats:title>\n                  <jats:p>shinyCircos and its manual are freely available at https:\/\/github.com\/venyao\/shinyCircos. shinyCircos is deployed at https:\/\/yimingyu.shinyapps.io\/shinycircos\/ and http:\/\/shinycircos.ncpgr.cn\/ for online use.<\/jats:p>\n               <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btx763","type":"journal-article","created":{"date-parts":[[2017,11,23]],"date-time":"2017-11-23T12:10:12Z","timestamp":1511439012000},"page":"1229-1231","source":"Crossref","is-referenced-by-count":288,"title":["shinyCircos: an R\/Shiny application for interactive creation of Circos plot"],"prefix":"10.1093","volume":"34","author":[{"given":"Yiming","family":"Yu","sequence":"first","affiliation":[{"name":"National Key Laboratory of Crop Genetic Improvement, National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4966-1005","authenticated-orcid":false,"given":"Yidan","family":"Ouyang","sequence":"additional","affiliation":[{"name":"National Key Laboratory of Crop Genetic Improvement, National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Wen","family":"Yao","sequence":"additional","affiliation":[{"name":"National Key Laboratory of Crop Genetic Improvement, National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan, China"},{"name":"College of Life Sciences, Henan Agricultural University, Zhengzhou, China"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2017,11,24]]},"reference":[{"key":"2023012712563313900_btx763-B1","doi-asserted-by":"crossref","first-page":"1463","DOI":"10.1093\/bioinformatics\/btu842","article-title":"J-Circos: an interactive Circos plotter","volume":"31","author":"An","year":"2015","journal-title":"Bioinformatics"},{"key":"2023012712563313900_btx763-B2","doi-asserted-by":"crossref","first-page":"1740","DOI":"10.1093\/bioinformatics\/btw041","article-title":"BioCircos.js: an interactive Circos JavaScript library for biological data visualization on web applications","volume":"32","author":"Cui","year":"2016","journal-title":"Bioinformatics"},{"key":"2023012712563313900_btx763-B3","doi-asserted-by":"crossref","first-page":"2811","DOI":"10.1093\/bioinformatics\/btu393","article-title":"circlize implements and enhances circular visualization in R","volume":"30","author":"Gu","year":"2014","journal-title":"Bioinformatics"},{"key":"2023012712563313900_btx763-B4","first-page":"13","article-title":"OmicCircos: a simple-to-use R package for the circular visualization of multidimensional omics data","volume":"13","author":"Hu","year":"2014","journal-title":"Cancer Inf"},{"key":"2023012712563313900_btx763-B5","doi-asserted-by":"crossref","first-page":"1639","DOI":"10.1101\/gr.092759.109","article-title":"Circos: An information aesthetic for comparative genomics","volume":"19","author":"Krzywinski","year":"2009","journal-title":"Genome Res"},{"key":"2023012712563313900_btx763-B6","doi-asserted-by":"crossref","first-page":"256","DOI":"10.1093\/bib\/bbs086","article-title":"A survey of tools for variant analysis of next-generation genome sequencing data","volume":"15","author":"Pabinger","year":"2014","journal-title":"Brief. Bioinf"},{"key":"2023012712563313900_btx763-B7","doi-asserted-by":"crossref","first-page":"244","DOI":"10.1186\/1471-2105-14-244","article-title":"RCircos: an R package for Circos 2D track plots","volume":"14","author":"Zhang","year":"2013","journal-title":"BMC Bioinformatics"}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/34\/7\/1229\/48913886\/bioinformatics_34_7_1229.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/34\/7\/1229\/48913886\/bioinformatics_34_7_1229.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,27]],"date-time":"2023-01-27T13:44:10Z","timestamp":1674827050000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/34\/7\/1229\/4657077"}},"subtitle":[],"editor":[{"given":"John","family":"Hancock","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"editor"}]}],"short-title":[],"issued":{"date-parts":[[2017,11,24]]},"references-count":7,"journal-issue":{"issue":"7","published-print":{"date-parts":[[2018,4,1]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btx763","relation":{},"ISSN":["1367-4803","1367-4811"],"issn-type":[{"value":"1367-4803","type":"print"},{"value":"1367-4811","type":"electronic"}],"subject":[],"published-other":{"date-parts":[[2018,4,1]]},"published":{"date-parts":[[2017,11,24]]}}}