{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,27]],"date-time":"2025-10-27T16:13:54Z","timestamp":1761581634640,"version":"3.37.3"},"reference-count":12,"publisher":"Oxford University Press (OUP)","issue":"9","license":[{"start":{"date-parts":[[2017,12,12]],"date-time":"2017-12-12T00:00:00Z","timestamp":1513036800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/academic.oup.com\/journals\/pages\/about_us\/legal\/notices"}],"funder":[{"DOI":"10.13039\/100000060","name":"NIAID","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100000060","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000002","name":"NIH","doi-asserted-by":"publisher","award":["R01 AI117011"],"award-info":[{"award-number":["R01 AI117011"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000002","name":"NIH","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2018,5,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:sec>\n                  <jats:title>Summary<\/jats:title>\n                  <jats:p>GeoBoost is a command-line software package developed to address sparse or incomplete metadata in GenBank sequence records that relate to the location of the infected host (LOIH) of viruses. Given a set of GenBank accession numbers corresponding to virus GenBank records, GeoBoost extracts, integrates and normalizes geographic information reflecting the LOIH of the viruses using integrated information from GenBank metadata and related full-text publications. In addition, to facilitate probabilistic geospatial modeling, GeoBoost assigns probability scores for each possible LOIH.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Availability and implementation<\/jats:title>\n                  <jats:p>Binaries and resources required for running GeoBoost are packed into a single zipped file and freely available for download at https:\/\/tinyurl.com\/geoboost. A video tutorial is included to help users quickly and easily install and run the software. The software is implemented in Java 1.8, and supported on MS Windows and Linux platforms.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Supplementary information<\/jats:title>\n                  <jats:p>Supplementary data are available at Bioinformatics online.<\/jats:p>\n               <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btx799","type":"journal-article","created":{"date-parts":[[2017,12,12]],"date-time":"2017-12-12T04:13:43Z","timestamp":1513052023000},"page":"1606-1608","source":"Crossref","is-referenced-by-count":11,"title":["GeoBoost: accelerating research involving the geospatial metadata of virus GenBank records"],"prefix":"10.1093","volume":"34","author":[{"given":"Tasnia","family":"Tahsin","sequence":"first","affiliation":[{"name":"Department of Biomedical Informatics, Arizona State University, Scottsdale, AZ, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Davy","family":"Weissenbacher","sequence":"additional","affiliation":[{"name":"Department of Biomedical Informatics, Arizona State University, Scottsdale, AZ, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Karen","family":"O\u2019Connor","sequence":"additional","affiliation":[{"name":"Institute of Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Arjun","family":"Magge","sequence":"additional","affiliation":[{"name":"Department of Biomedical Informatics, Arizona State University, Scottsdale, AZ, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-5100-9724","authenticated-orcid":false,"given":"Matthew","family":"Scotch","sequence":"additional","affiliation":[{"name":"Department of Biomedical Informatics, Arizona State University, Scottsdale, AZ, USA"},{"name":"Biodesign Center for Environmental Health Engineering, Arizona State University, Tempe, AZ, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Graciela","family":"Gonzalez-Hernandez","sequence":"additional","affiliation":[{"name":"Institute of Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2017,12,12]]},"reference":[{"key":"2023012713032070700_btx799-B1","doi-asserted-by":"crossref","first-page":"D36","DOI":"10.1093\/nar\/gks1195","article-title":"GenBank","volume":"41","author":"Benson","year":"2013","journal-title":"Nucleic Acids Res"},{"key":"2023012713032070700_btx799-B2","article-title":"Tempus et Locus: a tool for extracting precisely dated viral sequences from GenBank, and its application to the phylogenetics of primate erythroparvovirus 1 (B19V)","author":"Carter","year":"2016","journal-title":"bioRxiv"},{"key":"2023012713032070700_btx799-B3","first-page":"6","article-title":"Towards structuring unstructured genbank metadata for enhancing comparative biological studies","volume":"2011","author":"Chen","year":"2011","journal-title":"AMIA Jt. 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