{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,15]],"date-time":"2025-10-15T17:48:41Z","timestamp":1760550521007,"version":"3.37.3"},"reference-count":10,"publisher":"Oxford University Press (OUP)","issue":"15","license":[{"start":{"date-parts":[[2018,3,28]],"date-time":"2018-03-28T00:00:00Z","timestamp":1522195200000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/100004440","name":"Wellcome Trust","doi-asserted-by":"publisher","award":["105614\/Z\/14\/Z"],"award-info":[{"award-number":["105614\/Z\/14\/Z"]}],"id":[{"id":"10.13039\/100004440","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2018,8,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:sec>\n                  <jats:title>Motivation<\/jats:title>\n                  <jats:p>The rapid advances in metabolomics pose a significant challenge in presentation and interpretation of results. Development of new, engaging visual aids is crucial to advancing our understanding of new findings.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Results<\/jats:title>\n                  <jats:p>We have developed MetaboCraft, a Minecraft plugin which creates immersive visualizations of metabolic networks and pathways in a 3D environment and allows the results of user experiments to be viewed in this context, presenting a novel approach to exploring the metabolome.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Availability and implementation<\/jats:title>\n                  <jats:p>https:\/\/github.com\/argymeg\/MetaboCraft\/; https:\/\/hub.docker.com\/r\/ronandaly\/metabocraft\/<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Supplementary information<\/jats:title>\n                  <jats:p>Supplementary data are available at Bioinformatics online.<\/jats:p>\n               <\/jats:sec>","DOI":"10.1093\/bioinformatics\/bty102","type":"journal-article","created":{"date-parts":[[2018,3,27]],"date-time":"2018-03-27T19:22:47Z","timestamp":1522178567000},"page":"2693-2694","source":"Crossref","is-referenced-by-count":3,"title":["MetaboCraft: building a Minecraft plugin for metabolomics"],"prefix":"10.1093","volume":"34","author":[{"given":"Anargyros","family":"Megalios","sequence":"first","affiliation":[{"name":"Glasgow Polyomics, University of Glasgow, Glasgow, UK"},{"name":"Institute of Infection, Immunity and Inflammation, College of Medical Veterinary and Life Sciences, University of Glasgow, Glasgow, UK"}]},{"given":"R\u00f3n\u00e1n","family":"Daly","sequence":"additional","affiliation":[{"name":"Institute of Infection, Immunity and Inflammation, College of Medical Veterinary and Life Sciences, University of Glasgow, Glasgow, UK"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-0881-715X","authenticated-orcid":false,"given":"Karl","family":"Burgess","sequence":"additional","affiliation":[{"name":"Glasgow Polyomics, University of Glasgow, Glasgow, UK"},{"name":"Institute of Infection, Immunity and Inflammation, College of Medical Veterinary and Life Sciences, University of Glasgow, Glasgow, UK"}]}],"member":"286","published-online":{"date-parts":[[2018,3,28]]},"reference":[{"key":"2023012713070088600_bty102-B1","doi-asserted-by":"crossref","first-page":"105","DOI":"10.1007\/978-3-642-18638-7_5","volume-title":"Graph Drawing Software, Mathematics and Visualization","author":"Auber","year":"2004"},{"key":"2023012713070088600_bty102-B2","doi-asserted-by":"crossref","first-page":"W132","DOI":"10.1093\/nar\/gkq312","article-title":"MetExplore: a web server to link metabolomic experiments and genome-scale metabolic networks","volume":"38","author":"Cottret","year":"2010","journal-title":"Nucleic Acids Res"},{"key":"2023012713070088600_bty102-B3","doi-asserted-by":"crossref","first-page":"1393","DOI":"10.1017\/S0031182010000363","article-title":"Graph methods for the investigation of metabolic networks in parasitology","volume":"137","author":"Cottret","year":"2010","journal-title":"Parasitology"},{"key":"2023012713070088600_bty102-B4","doi-asserted-by":"crossref","first-page":"4007","DOI":"10.1093\/bioinformatics\/btx499","article-title":"PiMP my metabolome: an integrated, web-based tool for LC-MS metabolomics data","volume":"33","author":"Gloaguen","year":"2017","journal-title":"Bioinformatics"},{"key":"2023012713070088600_bty102-B5","doi-asserted-by":"crossref","first-page":"58","DOI":"10.1016\/j.cbpa.2016.12.024","article-title":"Global open data management in metabolomics","volume":"36","author":"Haug","year":"2017","journal-title":"Curr. 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Biotechnol"}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/34\/15\/2693\/48935574\/bioinformatics_34_15_2693.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/34\/15\/2693\/48935574\/bioinformatics_34_15_2693.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,27]],"date-time":"2023-01-27T14:10:55Z","timestamp":1674828655000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/34\/15\/2693\/4956010"}},"subtitle":[],"editor":[{"given":"Janet","family":"Kelso","sequence":"additional","affiliation":[]}],"short-title":[],"issued":{"date-parts":[[2018,3,28]]},"references-count":10,"journal-issue":{"issue":"15","published-print":{"date-parts":[[2018,8,1]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/bty102","relation":{},"ISSN":["1367-4803","1367-4811"],"issn-type":[{"type":"print","value":"1367-4803"},{"type":"electronic","value":"1367-4811"}],"subject":[],"published-other":{"date-parts":[[2018,8,1]]},"published":{"date-parts":[[2018,3,28]]}}}