{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,15]],"date-time":"2026-04-15T13:29:35Z","timestamp":1776259775540,"version":"3.50.1"},"reference-count":18,"publisher":"Oxford University Press (OUP)","issue":"14","license":[{"start":{"date-parts":[[2018,3,5]],"date-time":"2018-03-05T00:00:00Z","timestamp":1520208000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/academic.oup.com\/journals\/pages\/about_us\/legal\/notices"}],"funder":[{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["31671326"],"award-info":[{"award-number":["31671326"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Strategic Priority Research Program"},{"DOI":"10.13039\/501100002367","name":"Chinese Academy of Sciences","doi-asserted-by":"publisher","award":["XDB13020200"],"award-info":[{"award-number":["XDB13020200"]}],"id":[{"id":"10.13039\/501100002367","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100004739","name":"Youth Innovation Promotion Association, Chinese Academy of Sciences","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100004739","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2018,7,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:sec>\n                  <jats:title>Summary<\/jats:title>\n                  <jats:p>FasParser is a graphical platform for manipulating sequences and alignments in a batch mode. It is particularly useful for biologists handling large datasets of sequences, even without an experience in programming. Here, I present an updated version \u2018FasParser2\u2019, featuring numerous improvements with sets of novel functions that can facilitate sequence manipulation. Its main additional features include (i) re-designed graphical interface which greatly improves its capability for batch processing, (ii) a trimming function to strip poorly-aligned regions in multiple sequence alignments, (iii) a series of functions that can identify as well as remove \u2018bad\u2019 sequence (either too short or too divergent sequences), (iv) an Editor tool for viewing and editing of biological sequences and (v) interfaces (with other programs) for detection of positive selection as well as primer design.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Availability and implementation<\/jats:title>\n                  <jats:p>The compiled Windows binary is freely available at https:\/\/github.com\/Sun-Yanbo\/FasParser\/releases.<\/jats:p>\n               <\/jats:sec>","DOI":"10.1093\/bioinformatics\/bty126","type":"journal-article","created":{"date-parts":[[2018,3,2]],"date-time":"2018-03-02T12:10:20Z","timestamp":1519992620000},"page":"2493-2495","source":"Crossref","is-referenced-by-count":35,"title":["FasParser2: a graphical platform for batch manipulation of tremendous amount of sequence data"],"prefix":"10.1093","volume":"34","author":[{"given":"Yan-Bo","family":"Sun","sequence":"first","affiliation":[{"name":"State Key Laboratory of Genetic Resources and Evolution, and Center for excellence in Animal Evolution and Genetics, Chinese Academy of Sciences, Kunming, Yunnan, China"}]}],"member":"286","published-online":{"date-parts":[[2018,3,5]]},"reference":[{"key":"2023012713015904500_bty126-B1","doi-asserted-by":"crossref","first-page":"540","DOI":"10.1093\/oxfordjournals.molbev.a026334","article-title":"Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis","volume":"17","author":"Castresana","year":"2000","journal-title":"Mol. 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