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Our contribution is concentrated on facilitating extensibility and interoperability of the software through decoupling the data model from the user interface. Especially with assistance from the Python ecosystem, this software framework makes modern computer algorithms easier to be applied in bioimage analysis.<\/jats:p><\/jats:sec><jats:sec><jats:title>Availability and implementation<\/jats:title><jats:p>ImagePy is free and open source software, with documentation and code available at https:\/\/github.com\/Image-Py\/imagepy under the BSD license. It has been tested on the Windows, Mac and Linux operating systems.<\/jats:p><\/jats:sec>","DOI":"10.1093\/bioinformatics\/bty313","type":"journal-article","created":{"date-parts":[[2018,4,26]],"date-time":"2018-04-26T06:44:29Z","timestamp":1524725069000},"page":"3238-3240","source":"Crossref","is-referenced-by-count":47,"title":["ImagePy: an open-source, Python-based and platform-independent software package for bioimage analysis"],"prefix":"10.1093","volume":"34","author":[{"given":"Anliang","family":"Wang","sequence":"first","affiliation":[{"name":"Division of Marine Disaster Forecasting and Warning, National Marine Environmental Forecasting Center, Haidian District, Beijing, China"}]},{"given":"Xiaolong","family":"Yan","sequence":"additional","affiliation":[{"name":"Division of Marine Disaster Forecasting and Warning, National Marine Environmental Forecasting Center, Haidian District, Beijing, China"}]},{"given":"Zhijun","family":"Wei","sequence":"additional","affiliation":[{"name":"State Key Laboratory of Coastal and Offshore Engineering, Dalian University of Technology, Dalian, China"}]}],"member":"286","published-online":{"date-parts":[[2018,4,27]]},"reference":[{"key":"2023012704175762500_bty313-B1","doi-asserted-by":"crossref","first-page":"3210","DOI":"10.1093\/bioinformatics\/btw390","article-title":"CellProfiler Analyst: interactive data exploration, analysis, and classification of large biological image sets","volume":"32","author":"Dao","year":"2016","journal-title":"Bioinformatics"},{"key":"2023012704175762500_bty313-B2","doi-asserted-by":"crossref","first-page":"90","DOI":"10.1109\/MCSE.2007.55","article-title":"Matplotlib: a 2D graphics environment","volume":"9","author":"Hunter","year":"2007","journal-title":"Comput. 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