{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,31]],"date-time":"2026-03-31T08:28:12Z","timestamp":1774945692849,"version":"3.50.1"},"reference-count":16,"publisher":"Oxford University Press (OUP)","issue":"21","license":[{"start":{"date-parts":[[2018,6,5]],"date-time":"2018-06-05T00:00:00Z","timestamp":1528156800000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/4.0\/"}],"funder":[{"DOI":"10.13039\/100007225","name":"Ministry of Science and Technology","doi-asserted-by":"publisher","award":["105-2621-B-001-003"],"award-info":[{"award-number":["105-2621-B-001-003"]}],"id":[{"id":"10.13039\/100007225","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001869","name":"Academia Sinica","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100001869","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2018,11,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:sec>\n                  <jats:title>Summary<\/jats:title>\n                  <jats:p>We present MIDORI server, a user-friendly web platform that uses a curated reference dataset, MIDORI, for high throughput taxonomic classification of unknown metazoan mitochondrial-encoded gene sequences. Currently three methods of taxonomic assignments: RDP Classifier, SPINGO and SINTAX, are implemented.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Availability and implementation<\/jats:title>\n                  <jats:p>The web server is freely available at {http:\/\/reference-midori.info\/server.php}.<\/jats:p>\n               <\/jats:sec>","DOI":"10.1093\/bioinformatics\/bty454","type":"journal-article","created":{"date-parts":[[2018,6,1]],"date-time":"2018-06-01T11:34:45Z","timestamp":1527852885000},"page":"3753-3754","source":"Crossref","is-referenced-by-count":64,"title":["MIDORI server: a webserver for taxonomic assignment of unknown metazoan mitochondrial-encoded sequences using a curated database"],"prefix":"10.1093","volume":"34","author":[{"given":"Matthieu","family":"Leray","sequence":"first","affiliation":[{"name":"Smithsonian Tropical Research Institute, Smithsonian Institution, Panama City, Republic of Panama"}]},{"given":"Shian-Lei","family":"Ho","sequence":"additional","affiliation":[{"name":"Biodiversity Research Centre, Academia Sinica, Taipei, Taiwan"}]},{"given":"I-Jeng","family":"Lin","sequence":"additional","affiliation":[{"name":"Biodiversity Research Centre, Academia Sinica, Taipei, Taiwan"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-1687-4709","authenticated-orcid":false,"given":"Ryuji J","family":"Machida","sequence":"additional","affiliation":[{"name":"Biodiversity Research Centre, Academia Sinica, Taipei, Taiwan"}]}],"member":"286","published-online":{"date-parts":[[2018,6,5]]},"reference":[{"key":"2023012712443791300_bty454-B1","doi-asserted-by":"crossref","first-page":"724","DOI":"10.1139\/gen-2015-0208","article-title":"Deep COI sequencing of standardized benthic samples unveils overlooked diversity of Jordanian coral reefs in the northern Red Sea","volume":"59","author":"Al-Rshaidat","year":"2016","journal-title":"Genome"},{"key":"2023012712443791300_bty454-B2","doi-asserted-by":"crossref","first-page":"324.","DOI":"10.1186\/s12859-015-0747-1","article-title":"SPINGO: a rapid species-classifier for microbial amplicon sequences","volume":"16","author":"Allard","year":"2015","journal-title":"BMC Bioinformatics"},{"key":"2023012712443791300_bty454-B3","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1093\/gigascience\/gix080","article-title":"Development and validation of a multi-locus DNA metabarcoding method to identify endangered species in complex samples","volume":"6","author":"Arulandhu","year":"2017","journal-title":"GigaScience"},{"key":"2023012712443791300_bty454-B4","doi-asserted-by":"crossref","first-page":"1403","DOI":"10.1111\/1755-0998.12399","article-title":"METAXA2: improved identification and taxonomic classification of small and large subunit rRNA in metagenomic data","volume":"15","author":"Bengtsson-Palme","year":"2015","journal-title":"Mol. 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