{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,2]],"date-time":"2026-04-02T16:56:18Z","timestamp":1775148978267,"version":"3.50.1"},"reference-count":28,"publisher":"Oxford University Press (OUP)","issue":"1","license":[{"start":{"date-parts":[[2018,7,9]],"date-time":"2018-07-09T00:00:00Z","timestamp":1531094400000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100004281","name":"National Science Centre","doi-asserted-by":"publisher","award":["2016\/23\/B\/ST6\/03931"],"award-info":[{"award-number":["2016\/23\/B\/ST6\/03931"]}],"id":[{"id":"10.13039\/501100004281","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100004239","name":"Poznan University of Technology","doi-asserted-by":"publisher","award":["09\/91\/DSPB\/0649]"],"award-info":[{"award-number":["09\/91\/DSPB\/0649]"]}],"id":[{"id":"10.13039\/501100004239","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100020811","name":"Institute of Bioorganic Chemistry","doi-asserted-by":"crossref","id":[{"id":"10.13039\/501100020811","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/501100004382","name":"Polish Academy of Sciences","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100004382","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2019,1,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:sec>\n                  <jats:title>Motivation<\/jats:title>\n                  <jats:p>In the study of 3D RNA structure, information about non-canonical interactions between nucleobases is increasingly important. Specialized databases support investigation of this issue based on experimental data, and several programs can annotate non-canonical base pairs in the RNA 3D structure. However, predicting the extended RNA secondary structure which describes both canonical and non-canonical interactions remains difficult.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Results<\/jats:title>\n                  <jats:p>Here, we present RNAvista that allows predicting an extended RNA secondary structure from sequence or from the list enumerating canonical base pairs only. RNAvista is implemented as a publicly available webserver with user-friendly interface. It runs on all major web browsers.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Availability and implementation<\/jats:title>\n                  <jats:p>http:\/\/rnavista.cs.put.poznan.pl<\/jats:p>\n               <\/jats:sec>","DOI":"10.1093\/bioinformatics\/bty609","type":"journal-article","created":{"date-parts":[[2018,7,7]],"date-time":"2018-07-07T06:00:37Z","timestamp":1530943237000},"page":"152-155","source":"Crossref","is-referenced-by-count":16,"title":["RNAvista: a webserver to assess RNA secondary structures with non-canonical base pairs"],"prefix":"10.1093","volume":"35","author":[{"given":"Maciej","family":"Antczak","sequence":"first","affiliation":[{"name":"Institute of Computing Science, Poznan University of Technology, Poznan, Poland"},{"name":"Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland"}]},{"given":"Marcin","family":"Zablocki","sequence":"additional","affiliation":[{"name":"Institute of Computing Science, Poznan University of Technology, Poznan, Poland"}]},{"given":"Tomasz","family":"Zok","sequence":"additional","affiliation":[{"name":"Institute of Computing Science, Poznan University of Technology, Poznan, Poland"}]},{"given":"Agnieszka","family":"Rybarczyk","sequence":"additional","affiliation":[{"name":"Institute of Computing Science, Poznan University of Technology, Poznan, Poland"},{"name":"Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland"}]},{"given":"Jacek","family":"Blazewicz","sequence":"additional","affiliation":[{"name":"Institute of Computing Science, Poznan University of Technology, Poznan, Poland"},{"name":"Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland"}]},{"given":"Marta","family":"Szachniuk","sequence":"additional","affiliation":[{"name":"Institute of Computing Science, Poznan University of Technology, Poznan, Poland"},{"name":"Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland"}]}],"member":"286","published-online":{"date-parts":[[2018,7,9]]},"reference":[{"key":"2023013107214053800_bty609-B1","doi-asserted-by":"crossref","first-page":"340","DOI":"10.1186\/1471-2105-9-340","article-title":"RNA STRAND: the RNA secondary structure and statistical analysis database","volume":"9","author":"Andronescu","year":"2008","journal-title":"BMC Bioinformatics"},{"key":"2023013107214053800_bty609-B2","doi-asserted-by":"crossref","first-page":"W368","DOI":"10.1093\/nar\/gku330","article-title":"RNApdbee\u2013a webserver to derive secondary structures from pdb files of knotted and unknotted RNAs","volume":"42","author":"Antczak","year":"2014","journal-title":"Nucleic Acids Res."},{"key":"2023013107214053800_bty609-B3","first-page":"737","article-title":"New functionality of RNAComposer: an application to shape the axis of miR160 precursor structure","volume":"63","author":"Antczak","year":"2016","journal-title":"Acta Biochim. 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