{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,26]],"date-time":"2026-02-26T20:34:50Z","timestamp":1772138090600,"version":"3.50.1"},"reference-count":6,"publisher":"Oxford University Press (OUP)","issue":"1","license":[{"start":{"date-parts":[[2018,7,25]],"date-time":"2018-07-25T00:00:00Z","timestamp":1532476800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/academic.oup.com\/journals\/pages\/open_access\/funder_policies\/chorus\/standard_publication_model"}],"funder":[{"DOI":"10.13039\/100016842","name":"Institut Fran\u00e7ais de Bioinformatique","doi-asserted-by":"crossref","id":[{"id":"10.13039\/100016842","id-type":"DOI","asserted-by":"crossref"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2019,1,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:sec>\n                    <jats:title>Summary<\/jats:title>\n                    <jats:p>WAVES is a web application dedicated to bioinformatic tool integration. It provides an efficient way to implement a service for any bioinformatic software. Such services are automatically made available in three ways: web pages, web forms to include in remote websites and a RESTful web services single application programing interface to access remotely from applications. In order to fulfill the service\u2019s computational needs, WAVES can perform computation on various resources and environments, such as Galaxy instances.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Availability and implementation<\/jats:title>\n                    <jats:p>WAVES was developed with Django, a Python-based web framework. It was designed as a reusable web application. It is fully portable, as only a Python installation is required to run Django. It is licensed under GNU General Public License. Source code, documentation with examples and demo are available from http:\/\/www.atgc-montpellier.fr\/waves\/.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Supplementary information<\/jats:title>\n                    <jats:p>Supplementary data are available at Bioinformatics online.<\/jats:p>\n                  <\/jats:sec>","DOI":"10.1093\/bioinformatics\/bty639","type":"journal-article","created":{"date-parts":[[2018,7,24]],"date-time":"2018-07-24T18:37:59Z","timestamp":1532457479000},"page":"140-142","source":"Crossref","is-referenced-by-count":1,"title":["WAVES: a web application for versatile enhanced bioinformatic services"],"prefix":"10.1093","volume":"35","author":[{"given":"Marc","family":"Chakiachvili","sequence":"first","affiliation":[{"name":"LIRMM UMR 5506 - CNRS & Universit\u00e9 de Montpellier, Montpellier, France"},{"name":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Cambridge, UK"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sylvain","family":"Milanesi","sequence":"additional","affiliation":[{"name":"LIRMM UMR 5506 - CNRS & Universit\u00e9 de Montpellier, Montpellier, France"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Anne-Muriel","family":"Arigon Chifolleau","sequence":"additional","affiliation":[{"name":"LIRMM UMR 5506 - CNRS & Universit\u00e9 de Montpellier, Montpellier, France"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Vincent","family":"Lefort","sequence":"additional","affiliation":[{"name":"LIRMM UMR 5506 - CNRS & Universit\u00e9 de Montpellier, Montpellier, France"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2018,7,25]]},"reference":[{"key":"2023013107220563700_bty639-B1","doi-asserted-by":"crossref","first-page":"W465","DOI":"10.1093\/nar\/gkn180","article-title":"Phylogeny.fr: robust phylogenetic analysis for the non-specialist","volume":"36","author":"Dereeper","year":"2008","journal-title":"Nucleic Acids Res"},{"key":"2023013107220563700_bty639-B2","volume-title":"Addison-Wesley Professional Computing Series","author":"Gamma","year":"1995"},{"key":"2023013107220563700_bty639-B3","doi-asserted-by":"crossref","first-page":"R86","DOI":"10.1186\/gb-2010-11-8-r86","article-title":"Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences","volume":"11","author":"Goecks","year":"2010","journal-title":"Genome Biol"},{"key":"2023013107220563700_bty639-B4","doi-asserted-by":"crossref","first-page":"3005","DOI":"10.1093\/bioinformatics\/btp493","article-title":"Mobyle: a new full web bioinformatics framework","volume":"25","author":"Neron","year":"2009","journal-title":"Bioinformatics"},{"key":"2023013107220563700_bty639-B5","doi-asserted-by":"crossref","first-page":"1685","DOI":"10.1093\/bioinformatics\/btt199","article-title":"BioBlend: automating pipeline analyses within Galaxy and CloudMan","volume":"29","author":"Sloggett","year":"2013","journal-title":"Bioinformatics"},{"key":"2023013107220563700_bty639-B6","first-page":"619","volume-title":"Seventh IEEE International Symposium on Cluster Computing and the Grid, 2007.","author":"Troger","year":"2007"}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/35\/1\/140\/48962800\/bioinformatics_35_1_140.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/35\/1\/140\/48962800\/bioinformatics_35_1_140.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,31]],"date-time":"2023-01-31T05:01:48Z","timestamp":1675141308000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/35\/1\/140\/5059493"}},"subtitle":[],"editor":[{"given":"John","family":"Hancock","sequence":"additional","affiliation":[],"role":[{"role":"editor","vocabulary":"crossref"}]}],"short-title":[],"issued":{"date-parts":[[2018,7,25]]},"references-count":6,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2019,1,1]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/bty639","relation":{"has-preprint":[{"id-type":"doi","id":"10.1101\/276485","asserted-by":"object"}]},"ISSN":["1367-4803","1367-4811"],"issn-type":[{"value":"1367-4803","type":"print"},{"value":"1367-4811","type":"electronic"}],"subject":[],"published-other":{"date-parts":[[2019,1,1]]},"published":{"date-parts":[[2018,7,25]]}}}