{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,26]],"date-time":"2026-02-26T20:34:50Z","timestamp":1772138090571,"version":"3.50.1"},"reference-count":5,"publisher":"Oxford University Press (OUP)","issue":"5","license":[{"start":{"date-parts":[[2018,8,21]],"date-time":"2018-08-21T00:00:00Z","timestamp":1534809600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/academic.oup.com\/journals\/pages\/open_access\/funder_policies\/chorus\/standard_publication_model"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2019,3,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:sec>\n                    <jats:title>Summary<\/jats:title>\n                    <jats:p>Genomic interval sets are fundamental elements of genome annotation and are the output of countless bioinformatics applications. Nevertheless, tool support for the manual curation of these data is currently limited. We developed VARAN-GIE, an extension of the popular Integrative Genomics Viewer (IGV) that adds functionality to edit, annotate and merge genomic interval sets. Data can easily be shared with other users and imported\/exported from\/to multiple common data formats.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Availability and implementation<\/jats:title>\n                    <jats:p>VARAN-GIE binary releases, source-code, user guides and tutorials are available at https:\/\/github.com\/popitsch\/varan-gie\/.<\/jats:p>\n                  <\/jats:sec>","DOI":"10.1093\/bioinformatics\/bty723","type":"journal-article","created":{"date-parts":[[2018,8,20]],"date-time":"2018-08-20T07:34:30Z","timestamp":1534750470000},"page":"868-870","source":"Crossref","is-referenced-by-count":4,"title":["VARAN-GIE: curation of genomic interval sets"],"prefix":"10.1093","volume":"35","author":[{"given":"Niko","family":"Popitsch","sequence":"first","affiliation":[{"name":"Children's Cancer Research Institute, St. Anna Kinderkrebsforschung, Zimmermannplatz 10, Vienna, Austria"}]}],"member":"286","published-online":{"date-parts":[[2018,8,21]]},"reference":[{"key":"2023013107260502600_bty723-B1","doi-asserted-by":"crossref","first-page":"996","DOI":"10.1101\/gr.229102","article-title":"The human genome browser at UCSC","volume":"12","author":"Kent","year":"2002","journal-title":"Genome Res"},{"key":"2023013107260502600_bty723-B2","doi-asserted-by":"crossref","first-page":"R93.","DOI":"10.1186\/gb-2013-14-8-r93","article-title":"Web apollo: a web-based genomic annotation editing platform","volume":"14","author":"Lee","year":"2013","journal-title":"Genome Biol"},{"key":"2023013107260502600_bty723-B3","doi-asserted-by":"crossref","first-page":"11.12.1","DOI":"10.1002\/0471250953.bi1112s47","article-title":"Bedtools: the Swiss-army tool for genome feature analysis","volume":"47","author":"Quinlan","year":"2014","journal-title":"Curr. Protocols Bioinform"},{"key":"2023013107260502600_bty723-B4","doi-asserted-by":"crossref","first-page":"24.","DOI":"10.1038\/nbt.1754","article-title":"Integrative genomics viewer","volume":"29","author":"Robinson","year":"2011","journal-title":"Nat. Biotechnol"},{"key":"2023013107260502600_bty723-B5","doi-asserted-by":"crossref","first-page":"944","DOI":"10.1093\/bioinformatics\/16.10.944","article-title":"Artemis: sequence visualization and annotation","volume":"16","author":"Rutherford","year":"2000","journal-title":"Bioinformatics"}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/35\/5\/868\/48966131\/bioinformatics_35_5_868.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/35\/5\/868\/48966131\/bioinformatics_35_5_868.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,31]],"date-time":"2023-01-31T04:58:11Z","timestamp":1675141091000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/35\/5\/868\/5077235"}},"subtitle":[],"editor":[{"given":"Inanc","family":"Birol","sequence":"additional","affiliation":[]}],"short-title":[],"issued":{"date-parts":[[2018,8,21]]},"references-count":5,"journal-issue":{"issue":"5","published-print":{"date-parts":[[2019,3,1]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/bty723","relation":{"has-preprint":[{"id-type":"doi","id":"10.1101\/333096","asserted-by":"object"}]},"ISSN":["1367-4803","1367-4811"],"issn-type":[{"value":"1367-4803","type":"print"},{"value":"1367-4811","type":"electronic"}],"subject":[],"published-other":{"date-parts":[[2019,3,1]]},"published":{"date-parts":[[2018,8,21]]}}}