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However, the potential benefit of these applications critically depends on accurate and correctly annotated alignments of genetically heterogeneous data. VIRULIGN was built for fast codon-correct alignments of large datasets, with standardized and formalized genome annotation and various alignment export formats.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Availability and implementation<\/jats:title>\n                    <jats:p>VIRULIGN is freely available at https:\/\/github.com\/rega-cev\/virulign as an open source software project.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Supplementary information<\/jats:title>\n                    <jats:p>Supplementary data is available at Bioinformatics online.<\/jats:p>\n                  <\/jats:sec>","DOI":"10.1093\/bioinformatics\/bty851","type":"journal-article","created":{"date-parts":[[2018,10,5]],"date-time":"2018-10-05T08:21:56Z","timestamp":1538727716000},"page":"1763-1765","source":"Crossref","is-referenced-by-count":56,"title":["VIRULIGN: fast codon-correct alignment and annotation of viral genomes"],"prefix":"10.1093","volume":"35","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-3906-758X","authenticated-orcid":false,"given":"Pieter J K","family":"Libin","sequence":"first","affiliation":[{"name":"KU Leuven, Rega Institute for Medical, Laboratorium of Clinical and Evolutionary Virology, Leuven, Belgium"},{"name":"Artificial Intelligence Lab, Department of Computer Science, Vrije Universiteit Brussel, Brussels, Belgium"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3898-9494","authenticated-orcid":false,"given":"Koen","family":"Deforche","sequence":"additional","affiliation":[{"name":"Emweb, Herent, Belgium"}]},{"given":"Ana B","family":"Abecasis","sequence":"additional","affiliation":[{"name":"Center for Global Health and Tropical Medicine, Institute for Hygiene and Tropical Medicine, Lisboa, Portugal"}]},{"given":"Kristof","family":"Theys","sequence":"additional","affiliation":[{"name":"KU Leuven, Rega Institute for Medical, Laboratorium of Clinical and Evolutionary Virology, Leuven, Belgium"}]}],"member":"286","published-online":{"date-parts":[[2018,10,8]]},"reference":[{"key":"2023013107490322100_bty851-B1","doi-asserted-by":"crossref","first-page":"W7","DOI":"10.1093\/nar\/gkq291","article-title":"TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations","volume":"38","author":"Abascal","year":"2010","journal-title":"Nucleic Acids Res"},{"key":"2023013107490322100_bty851-B2","doi-asserted-by":"crossref","first-page":"2222","DOI":"10.1038\/s41467-018-03763-2","article-title":"Phylodynamic assessment of intervention strategies for the West African Ebola virus outbreak","volume":"9","author":"Dellicour","year":"2018","journal-title":"Nat. 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