{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,2]],"date-time":"2026-07-02T14:49:42Z","timestamp":1783003782087,"version":"3.54.5"},"reference-count":8,"publisher":"Oxford University Press (OUP)","issue":"17","license":[{"start":{"date-parts":[[2019,1,21]],"date-time":"2019-01-21T00:00:00Z","timestamp":1548028800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/academic.oup.com\/journals\/pages\/open_access\/funder_policies\/chorus\/standard_publication_model"}],"funder":[{"name":"SoyaGen"},{"DOI":"10.13039\/100008762","name":"Genome Canada","doi-asserted-by":"publisher","award":["#5801"],"award-info":[{"award-number":["#5801"]}],"id":[{"id":"10.13039\/100008762","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2019,9,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:sec>\n                  <jats:title>Motivation<\/jats:title>\n                  <jats:p>Reduced-representation sequencing is a genome-wide scanning method for simultaneous discovery and genotyping of thousands to millions of single nucleotide polymorphisms that is used across a wide range of species. However, in this method a reproducible but very small fraction of the genome is captured for sequencing, while the resulting reads are typically aligned against the entire reference genome.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Results<\/jats:title>\n                  <jats:p>Here we present a skinny reference genome approach in which a simplified reference genome is used to decrease computing time for data processing and to increase single nucleotide polymorphism counts and accuracy. A skinny reference genome can be integrated into any reduced-representation sequencing analytical pipeline.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Availability and implementation<\/jats:title>\n                  <jats:p>https:\/\/bitbucket.org\/jerlar73\/SRG-Extractor.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Supplementary information<\/jats:title>\n                  <jats:p>Supplementary data are available at Bioinformatics online.<\/jats:p>\n               <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btz043","type":"journal-article","created":{"date-parts":[[2019,1,15]],"date-time":"2019-01-15T20:21:16Z","timestamp":1547583676000},"page":"3160-3162","source":"Crossref","is-referenced-by-count":2,"title":["SRG extractor: a skinny reference genome approach for reduced-representation sequencing"],"prefix":"10.1093","volume":"35","author":[{"given":"Davoud","family":"Torkamaneh","sequence":"first","affiliation":[{"name":"Universit\u00e9 Laval D\u00e9partement de Phytologie, , Qu\u00e9bec City, Canada"},{"name":"Institut de Biologie Int\u00e9grative et des Syst\u00e8mes (IBIS) , Universit\u00e9 Laval, Qu\u00e9bec City, Canada"},{"name":"University of Guelph Department of Plant Agriculture, , Guelph, ON, Canada"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"J\u00e9r\u00f4me","family":"Laroche","sequence":"additional","affiliation":[{"name":"Institut de Biologie Int\u00e9grative et des Syst\u00e8mes (IBIS) , Universit\u00e9 Laval, Qu\u00e9bec City, Canada"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Istvan","family":"Rajcan","sequence":"additional","affiliation":[{"name":"University of Guelph Department of Plant Agriculture, , Guelph, ON, Canada"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Fran\u00e7ois","family":"Belzile","sequence":"additional","affiliation":[{"name":"Universit\u00e9 Laval D\u00e9partement de Phytologie, , Qu\u00e9bec City, Canada"},{"name":"Institut de Biologie Int\u00e9grative et des Syst\u00e8mes (IBIS) , Universit\u00e9 Laval, Qu\u00e9bec City, Canada"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2019,1,21]]},"reference":[{"key":"2023062711313288600_btz043-B1","doi-asserted-by":"crossref","first-page":"1873","DOI":"10.1007\/s00122-018-3120-8","article-title":"When less can be better: how can we make genomic selection more cost-effective and accurate in barley?","volume":"131","author":"Abed","year":"2018","journal-title":"Theor. 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