{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,4,24]],"date-time":"2025-04-24T18:04:27Z","timestamp":1745517867931,"version":"3.37.3"},"reference-count":10,"publisher":"Oxford University Press (OUP)","issue":"21","license":[{"start":{"date-parts":[[2019,5,9]],"date-time":"2019-05-09T00:00:00Z","timestamp":1557360000000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"publisher","award":["1R25 GM119157"],"award-info":[{"award-number":["1R25 GM119157"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2019,11,1]]},"abstract":"Abstract<\/jats:title>\n \n Summary<\/jats:title>\n G-OnRamp provides a user-friendly, web-based platform for collaborative, end-to-end annotation of eukaryotic genomes using UCSC Assembly Hubs and JBrowse\/Apollo genome browsers with evidence tracks derived from sequence alignments, ab initio gene predictors, RNA-Seq data and repeat finders. G-OnRamp can be used to visualize large genomics datasets and to perform collaborative genome annotation projects in both research and educational settings.<\/jats:p>\n <\/jats:sec>\n \n Availability and implementation<\/jats:title>\n The virtual machine images and tutorials are available on the G-OnRamp web site (http:\/\/g-onramp.org\/deployments). The source code is available under an Academic Free License version 3.0 through the goeckslab GitHub repository (https:\/\/github.com\/goeckslab).<\/jats:p>\n <\/jats:sec>\n \n Supplementary information<\/jats:title>\n Supplementary data are available at Bioinformatics online.<\/jats:p>\n <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btz309","type":"journal-article","created":{"date-parts":[[2019,4,25]],"date-time":"2019-04-25T03:19:34Z","timestamp":1556162374000},"page":"4422-4423","source":"Crossref","is-referenced-by-count":10,"title":["G-OnRamp: a Galaxy-based platform for collaborative annotation of eukaryotic genomes"],"prefix":"10.1093","volume":"35","author":[{"given":"Yating","family":"Liu","sequence":"first","affiliation":[{"name":"Department of Biology, Washington University in St. Louis , St. Louis, MO, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Luke","family":"Sargent","sequence":"additional","affiliation":[{"name":"Computational Biology Program, Oregon Health and Science University , Portland, OR, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Wilson","family":"Leung","sequence":"additional","affiliation":[{"name":"Department of Biology, Washington University in St. Louis , St. Louis, MO, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sarah C R","family":"Elgin","sequence":"additional","affiliation":[{"name":"Department of Biology, Washington University in St. Louis , St. Louis, MO, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4583-5226","authenticated-orcid":false,"given":"Jeremy","family":"Goecks","sequence":"additional","affiliation":[{"name":"Computational Biology Program, Oregon Health and Science University , Portland, OR, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2019,5,9]]},"reference":[{"key":"2023062712532289600_btz309-B1","doi-asserted-by":"crossref","first-page":"802","DOI":"10.1016\/j.future.2018.04.037","article-title":"CloudLaunch: discover and deploy cloud applications","volume":"94","author":"Afgan","year":"2018","journal-title":"Future Gen. 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