{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,4,9]],"date-time":"2025-04-09T13:36:01Z","timestamp":1744205761939},"reference-count":8,"publisher":"Oxford University Press (OUP)","issue":"24","license":[{"start":{"date-parts":[[2019,6,24]],"date-time":"2019-06-24T00:00:00Z","timestamp":1561334400000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/4.0\/"}],"funder":[{"name":"Slovenian Research Agency grants","award":["N2-0078","J7-7303","P2-0103","J6-9372","P4-0165"],"award-info":[{"award-number":["N2-0078","J7-7303","P2-0103","J6-9372","P4-0165"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2019,12,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:sec>\n                  <jats:title>Summary<\/jats:title>\n                  <jats:p>Biomine Explorer is a web application that enables interactive exploration of large heterogeneous biological networks constructed from selected publicly available biological knowledge sources. It is built on top of Biomine, a system which integrates cross-references from several biological databases into a large heterogeneous probabilistic network. Biomine Explorer offers user-friendly interfaces for search, visualization, exploration and manipulation as well as public and private storage of discovered subnetworks with permanent links suitable for inclusion into scientific publications. A JSON-based web API for network search queries is also available for advanced users.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Availability and implementation<\/jats:title>\n                  <jats:p>Biomine Explorer is implemented as a web application, which is publicly available at https:\/\/biomine.ijs.si. Registration is not required but registered users can benefit from additional features such as private network repositories.<\/jats:p>\n               <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btz509","type":"journal-article","created":{"date-parts":[[2019,6,19]],"date-time":"2019-06-19T19:13:03Z","timestamp":1560971583000},"page":"5385-5388","source":"Crossref","is-referenced-by-count":9,"title":["Interactive exploration of heterogeneous biological networks with Biomine Explorer"],"prefix":"10.1093","volume":"35","author":[{"given":"Vid","family":"Podpe\u010dan","sequence":"first","affiliation":[{"name":"Department of Knowledge Technologies, Jo\u017eef Stefan Institute , Ljubljana, Slovenia"}]},{"given":"\u017diva","family":"Ram\u0161ak","sequence":"additional","affiliation":[{"name":"Department of Biotechnology and Systems Biology, National Institute of Biology , Ljubljana, Slovenia"}]},{"given":"Kristina","family":"Gruden","sequence":"additional","affiliation":[{"name":"Department of Biotechnology and Systems Biology, National Institute of Biology , Ljubljana, Slovenia"}]},{"given":"Hannu","family":"Toivonen","sequence":"additional","affiliation":[{"name":"Department of Computer Science, University of Helsinki , Helsinki, Finland"}]},{"given":"Nada","family":"Lavra\u010d","sequence":"additional","affiliation":[{"name":"Department of Knowledge Technologies, Jo\u017eef Stefan Institute , Ljubljana, Slovenia"},{"name":"Centre for Information Technologies and Applied Mathematics, University of Nova Gorica , Nova Gorica, Slovenia"}]}],"member":"286","published-online":{"date-parts":[[2019,6,24]]},"reference":[{"key":"2023013108404062300_btz509-B1","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/1471-2105-13-119","article-title":"Biomine: predicting links between biological entities using network models of heterogeneous databases","volume":"13","author":"Eronen","year":"2012","journal-title":"BMC Bioinformatics"},{"key":"2023013108404062300_btz509-B2","doi-asserted-by":"crossref","first-page":"1383","DOI":"10.1093\/bioinformatics\/btl081","article-title":"Graph-based analysis and visualization of experimental results with ONDEX","volume":"22","author":"K\u00f6hler","year":"2006","journal-title":"Bioinformatics"},{"key":"2023013108404062300_btz509-B3","doi-asserted-by":"crossref","first-page":"488","DOI":"10.1104\/pp.18.00450","article-title":"Network modeling unravels mechanisms of crosstalk between ethylene and salicylate signaling in potato","volume":"178","author":"Ram\u0161ak","year":"2018","journal-title":"Plant Physiol"},{"key":"2023013108404062300_btz509-B4","doi-asserted-by":"crossref","first-page":"2498","DOI":"10.1101\/gr.1239303","article-title":"Cytoscape: a software environment for integrated models of biomolecular interaction networks","volume":"13","author":"Shannon","year":"2003","journal-title":"Genome Res"},{"key":"2023013108404062300_btz509-B5","doi-asserted-by":"crossref","first-page":"17","DOI":"10.1109\/TKDE.2016.2598561","article-title":"A survey of heterogeneous information network analysis","volume":"29","author":"Shi","year":"2017","journal-title":"IEEE Trans. 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