{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,11,9]],"date-time":"2025-11-09T07:45:27Z","timestamp":1762674327975,"version":"3.37.3"},"reference-count":19,"publisher":"Oxford University Press (OUP)","issue":"24","license":[{"start":{"date-parts":[[2019,7,9]],"date-time":"2019-07-09T00:00:00Z","timestamp":1562630400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/academic.oup.com\/journals\/pages\/open_access\/funder_policies\/chorus\/standard_publication_model"}],"funder":[{"name":"ERC Council"},{"name":"H2020 project BioExcel"},{"DOI":"10.13039\/100008725","name":"ANII","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100008725","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Institute Pasteur of Montevideo"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2019,12,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:sec>\n                  <jats:title>Summary<\/jats:title>\n                  <jats:p>veriNA3d is an R package for the analysis of nucleic acids structural data, with an emphasis in complex RNA structures. In addition to single-structure analyses, veriNA3d also implements functions to handle whole datasets of mmCIF\/PDB structures that could be retrieved from public\/local repositories. Our package aims to fill a gap in the data mining of nucleic acids structures to produce flexible and high throughput analysis of structural databases.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Availability and implementation<\/jats:title>\n                  <jats:p>http:\/\/mmb.irbbarcelona.org\/gitlab\/dgallego\/veriNA3d.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Supplementary information<\/jats:title>\n                  <jats:p>Supplementary data are available at Bioinformatics online.<\/jats:p>\n               <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btz553","type":"journal-article","created":{"date-parts":[[2019,7,6]],"date-time":"2019-07-06T19:08:21Z","timestamp":1562440101000},"page":"5334-5336","source":"Crossref","is-referenced-by-count":5,"title":["VeriNA3d: an R package for nucleic acids data mining"],"prefix":"10.1093","volume":"35","author":[{"given":"Diego","family":"Gallego","sequence":"first","affiliation":[{"name":"Computational Biology Node, Institute for Research in Biomedicine (IRB Barcelona) , The Barcelona Institute of Science and Technology"},{"name":"Department of Biochemistry and Biomedicine, Faculty of Biology, University of Barcelona , Barcelona, Spain"}]},{"given":"Leonardo","family":"Darr\u00e9","sequence":"additional","affiliation":[{"name":"Computational Biology Node, Institute for Research in Biomedicine (IRB Barcelona) , The Barcelona Institute of Science and Technology"},{"name":"Functional Genomics Laboratory and Biomolecular Simulations Laboratory, Institute Pasteur of Montevideo , Montevideo, Uruguay"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5927-372X","authenticated-orcid":false,"given":"Pablo D","family":"Dans","sequence":"additional","affiliation":[{"name":"Computational Biology Node, Institute for Research in Biomedicine (IRB Barcelona) , The Barcelona Institute of Science and Technology"}]},{"given":"Modesto","family":"Orozco","sequence":"additional","affiliation":[{"name":"Computational Biology Node, Institute for Research in Biomedicine (IRB Barcelona) , The Barcelona Institute of Science and Technology"},{"name":"Department of Biochemistry and Biomedicine, Faculty of Biology, University of Barcelona , Barcelona, Spain"}]}],"member":"286","published-online":{"date-parts":[[2019,7,9]]},"reference":[{"key":"2023013108415339800_btz553-B1","doi-asserted-by":"crossref","first-page":"21","DOI":"10.1021\/acs.jpclett.6b02451","article-title":"The role of unconventional hydrogen bonds in determining BII propensities in B-DNA","volume":"8","author":"Balaceanu","year":"2017","journal-title":"J. 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