{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,17]],"date-time":"2026-07-17T02:16:02Z","timestamp":1784254562175,"version":"3.55.0"},"reference-count":11,"publisher":"Oxford University Press (OUP)","issue":"3","license":[{"start":{"date-parts":[[2019,8,8]],"date-time":"2019-08-08T00:00:00Z","timestamp":1565222400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/academic.oup.com\/journals\/pages\/open_access\/funder_policies\/chorus\/standard_publication_model"}],"funder":[{"name":"Shenzhen fundamental research funding","award":["JCYJ20180504165657443"],"award-info":[{"award-number":["JCYJ20180504165657443"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2020,2,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:sec>\n                  <jats:title>Summary<\/jats:title>\n                  <jats:p>The lollipop-diagram is one of the widely used graphical representations to visualize and explore translational effects of genetic mutations in cancer genomics. However, an easy-to-use lollipop-diagram tool with full functionality is still lacking. Here, we introduce g3viz, an R package that enables researchers to explore genetic mutation data using a lollipop-diagram in a web browser. With a few lines of R code, users can interactively visualize data details, annotate findings and export resultant diagrams in high-quality figures. Because of usefulness and usability, g3viz can be generally exploited by researchers with different levels of bioinformatics skills and programming experience.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Availability and implementation<\/jats:title>\n                  <jats:p>The R package is freely available under the MIT license from CRAN (http:\/\/cran.r-project.org\/web\/packages\/g3viz). The g3lollipop JavaScript package is freely available under MIT license at GitHub (https:\/\/github.com\/g3viz\/g3lollipop.js).<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Supplementary information<\/jats:title>\n                  <jats:p>Supplementary data are available at Bioinformatics online.<\/jats:p>\n               <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btz631","type":"journal-article","created":{"date-parts":[[2019,8,7]],"date-time":"2019-08-07T11:16:06Z","timestamp":1565176566000},"page":"928-929","source":"Crossref","is-referenced-by-count":25,"title":["G3viz: an R package to interactively visualize genetic mutation data using a lollipop-diagram"],"prefix":"10.1093","volume":"36","author":[{"given":"Xin","family":"Guo","sequence":"first","affiliation":[{"name":"School of Innovation and Entrepreneurship, Southern University of Science and Technology , Nanshan, Shenzhen 518055, China"},{"name":"Shenzhen Apostle-SUSTECH LTD , Baoan, Shenzhen 518101, China"},{"name":"Apostle Inc., Menlo Park , CA 94025, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Bo","family":"Zhang","sequence":"additional","affiliation":[{"name":"School of Innovation and Entrepreneurship, Southern University of Science and Technology , Nanshan, Shenzhen 518055, China"},{"name":"Shenzhen Apostle-SUSTECH LTD , Baoan, Shenzhen 518101, China"},{"name":"Apostle Inc., Menlo Park , CA 94025, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Wenqi","family":"Zeng","sequence":"additional","affiliation":[{"name":"Shenzhen Apostle-SUSTECH LTD , Baoan, Shenzhen 518101, China"},{"name":"Apostle Inc., Menlo Park , CA 94025, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Shuting","family":"Zhao","sequence":"additional","affiliation":[{"name":"Shenzhen Apostle-SUSTECH LTD , Baoan, Shenzhen 518101, China"},{"name":"Apostle Inc., Menlo Park , CA 94025, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Dongliang","family":"Ge","sequence":"additional","affiliation":[{"name":"School of Innovation and Entrepreneurship, Southern University of Science and Technology , Nanshan, Shenzhen 518055, China"},{"name":"Shenzhen Apostle-SUSTECH LTD , Baoan, Shenzhen 518101, China"},{"name":"Apostle Inc., Menlo Park , CA 94025, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2019,8,8]]},"reference":[{"key":"2023013110093004000_btz631-B1","doi-asserted-by":"crossref","first-page":"138D","DOI":"10.1093\/nar\/gkh121","article-title":"The Pfam protein families database","volume":"32","author":"Bateman","year":"2004","journal-title":"Nucleic Acids Res"},{"key":"2023013110093004000_btz631-B2","doi-asserted-by":"crossref","first-page":"2301","DOI":"10.1109\/TVCG.2011.185","article-title":"D3 data-driven documents","volume":"17","author":"Bostock","year":"2011","journal-title":"IEEE Trans. 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