{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,5]],"date-time":"2026-08-05T05:27:38Z","timestamp":1785907658885,"version":"3.56.0"},"reference-count":9,"publisher":"Oxford University Press (OUP)","issue":"4","license":[{"start":{"date-parts":[[2019,9,25]],"date-time":"2019-09-25T00:00:00Z","timestamp":1569369600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/academic.oup.com\/journals\/pages\/open_access\/funder_policies\/chorus\/standard_publication_model"}],"funder":[{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"publisher","award":["R35-GM130151"],"award-info":[{"award-number":["R35-GM130151"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"publisher","award":["R01-HG006677"],"award-info":[{"award-number":["R01-HG006677"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000183","name":"U. 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An interactive alignment coverage viewer can help in the validation of matches to a particular genome, which can be crucial when using metagenomics experiments for pathogen detection.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Availability and implementation<\/jats:title>\n                    <jats:p>Pavian is implemented in the R language as a modular Shiny web app and is freely available under GPL-3 from http:\/\/github.com\/fbreitwieser\/pavian.<\/jats:p>\n                  <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btz715","type":"journal-article","created":{"date-parts":[[2019,9,20]],"date-time":"2019-09-20T15:30:58Z","timestamp":1568993458000},"page":"1303-1304","source":"Crossref","is-referenced-by-count":447,"title":["Pavian: interactive analysis of metagenomics data for microbiome studies and pathogen identification"],"prefix":"10.1093","volume":"36","author":[{"given":"Florian P","family":"Breitwieser","sequence":"first","affiliation":[{"name":"Center for Computational Biology, Whiting School of Engineering , Johns Hopkins University, Baltimore, MD, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Steven L","family":"Salzberg","sequence":"additional","affiliation":[{"name":"Departments of Biomedical Engineering, Computer Science and Biostatistics , Johns Hopkins University, Baltimore, MD, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2019,9,25]]},"reference":[{"key":"2023013110161305500_btz715-B1","doi-asserted-by":"crossref","first-page":"2301","DOI":"10.1109\/TVCG.2011.185","article-title":"D\u00b3 data-driven documents","volume":"17","author":"Bostock","year":"2011","journal-title":"IEEE Trans. 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