{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,6]],"date-time":"2026-04-06T07:10:21Z","timestamp":1775459421994,"version":"3.50.1"},"reference-count":5,"publisher":"Oxford University Press (OUP)","issue":"6","license":[{"start":{"date-parts":[[2019,11,9]],"date-time":"2019-11-09T00:00:00Z","timestamp":1573257600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/academic.oup.com\/journals\/pages\/open_access\/funder_policies\/chorus\/standard_publication_model"}],"funder":[{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"publisher","award":["HL103411"],"award-info":[{"award-number":["HL103411"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"publisher","award":["GM126537"],"award-info":[{"award-number":["GM126537"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2020,3,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:sec>\n                  <jats:title>Summary<\/jats:title>\n                  <jats:p>This manuscript describes an open-source program, DrawGlycan-SNFG (version 2), that accepts IUPAC (International Union of Pure and Applied Chemist)-condensed inputs to render Symbol Nomenclature For Glycans (SNFG) drawings. A wide range of local and global options enable display of various glycan\/peptide modifications including bond breakages, adducts, repeat structures, ambiguous identifications etc. These facilities make DrawGlycan-SNFG ideal for integration into various glycoinformatics software, including glycomics and glycoproteomics mass spectrometry (MS) applications. As a demonstration of such usage, we incorporated DrawGlycan-SNFG into gpAnnotate, a standalone application to score and annotate individual MS\/MS glycopeptide spectrum in different fragmentation modes.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Availability and implementation<\/jats:title>\n                  <jats:p>DrawGlycan-SNFG and gpAnnotate are platform independent. While originally coded using MATLAB, compiled packages are also provided to enable DrawGlycan-SNFG implementation in Python and Java. All programs are available from https:\/\/virtualglycome.org\/drawglycan; https:\/\/virtualglycome.org\/gpAnnotate.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Supplementary information<\/jats:title>\n                  <jats:p>Supplementary data are available at Bioinformatics online.<\/jats:p>\n               <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btz819","type":"journal-article","created":{"date-parts":[[2019,11,7]],"date-time":"2019-11-07T20:11:20Z","timestamp":1573157480000},"page":"1942-1943","source":"Crossref","is-referenced-by-count":12,"title":["DrawGlycan-SNFG and gpAnnotate: rendering glycans and annotating glycopeptide mass spectra"],"prefix":"10.1093","volume":"36","author":[{"given":"Kai","family":"Cheng","sequence":"first","affiliation":[{"name":"Department of Chemical and Biological Engineering, Clinical and Translational Research Center, University at Buffalo, The State University of New York , Buffalo, NY 14260, USA"}]},{"given":"Gabrielle","family":"Pawlowski","sequence":"additional","affiliation":[{"name":"Department of Chemical and Biological Engineering, Clinical and Translational Research Center, University at Buffalo, The State University of New York , Buffalo, NY 14260, USA"}]},{"given":"Xinheng","family":"Yu","sequence":"additional","affiliation":[{"name":"Department of Chemical and Biological Engineering, Clinical and Translational Research Center, University at Buffalo, The State University of New York , Buffalo, NY 14260, USA"}]},{"given":"Yusen","family":"Zhou","sequence":"additional","affiliation":[{"name":"Department of Chemical and Biological Engineering, Clinical and Translational Research Center, University at Buffalo, The State University of New York , Buffalo, NY 14260, USA"}]},{"given":"Sriram","family":"Neelamegham","sequence":"additional","affiliation":[{"name":"Department of Chemical and Biological Engineering, Clinical and Translational Research Center, University at Buffalo, The State University of New York , Buffalo, NY 14260, USA"}]}],"member":"286","published-online":{"date-parts":[[2019,11,9]]},"reference":[{"key":"2023060911583598900_btz819-B1","doi-asserted-by":"crossref","first-page":"918","DOI":"10.1038\/nbt.2377","article-title":"A cross-platform toolkit for mass spectrometry and proteomics","volume":"30","author":"Chambers","year":"2012","journal-title":"Nat. Biotechnol"},{"key":"2023060911583598900_btz819-B2","first-page":"200","article-title":"DrawGlycan-SNFG: a robust tool to render glycans and glycopeptides with fragmentation information","volume":"27","author":"Cheng","year":"2017","journal-title":"Glycobiology"},{"key":"2023060911583598900_btz819-B3","doi-asserted-by":"crossref","first-page":"2032","DOI":"10.1074\/mcp.M117.068239","article-title":"A comprehensive, open-source platform for mass spectrometry-based glycoproteomics data analysis","volume":"16","author":"Liu","year":"2017","journal-title":"Mol. 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