{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,7,30]],"date-time":"2025-07-30T11:48:29Z","timestamp":1753876109417,"version":"3.41.2"},"reference-count":50,"publisher":"Oxford University Press (OUP)","license":[{"start":{"date-parts":[[2020,6,16]],"date-time":"2020-06-16T00:00:00Z","timestamp":1592265600000},"content-version":"vor","delay-in-days":167,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2020,1,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Despite Plasmodium vivax being the main offender in the majority of malarial infections, very little information is available about its adaptation and development in humans. Its capability for activating relapsing infections through its dormant liver stage and resistance to antimalarial drugs makes it as one of the major challenges in eradicating malaria. Noting the immediate necessity for the availability of a comprehensive and reliable structural and functional repository for P. vivax proteome, here we developed a web resource for the new reference genome, PvP01, furnishing information on sequence, structure, functions, active sites and metabolic pathways compiled and predicted using some of the state-of-the-art methods in respective fields. The PvP01 web resource comprises organized data on the soluble proteome consisting of 3664 proteins in blood and liver stages of malarial cycle. The current public resources represent only 163 proteins of soluble proteome of PvP01, with complete information about their molecular function, biological process and cellular components. Also, only 46 proteins of P. vivax have experimentally determined structures. In this milieu of extreme scarcity of structural and functional information, PvP01 web resource offers meticulously validated structures of 3664 soluble proteins. The sequence and structure-based functional characterization led to a quantum leap from 163 proteins available presently to whole soluble proteome offered through PvP01 web resource. We believe PvP01 web resource will serve the researchers in identifying novel protein drug targets and in accelerating the development of structure-based new drug candidates to combat malaria.<\/jats:p>\n               <jats:p>Database Availability: http:\/\/www.scfbio-iitd.res.in\/PvP01<\/jats:p>","DOI":"10.1093\/database\/baaa036","type":"journal-article","created":{"date-parts":[[2020,5,8]],"date-time":"2020-05-08T11:09:44Z","timestamp":1588936184000},"source":"Crossref","is-referenced-by-count":3,"title":["PvP01-DB: computational structural and functional characterization of soluble proteome of PvP01 strain of Plasmodium vivax"],"prefix":"10.1093","volume":"2020","author":[{"given":"Ankita","family":"Singh","sequence":"first","affiliation":[{"name":"Supercomputing Facility for Bioinformatics & Computational Biology, Indian Institute of Technology Delhi, Hauz Khas, New Delhi, India, 110016"},{"name":"Centre of Evolution and Medicine, Arizona State University, Life Sciences C, 427 East Tyler Mall, Tempe, AZ 85281, United States"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Rahul","family":"Kaushik","sequence":"first","affiliation":[{"name":"Supercomputing Facility for Bioinformatics & Computational Biology, Indian Institute of Technology Delhi, Hauz Khas, New Delhi, India, 110016"},{"name":"Laboratory for Structural Bioinformatics, Center for Biosystems Dynamics Research, RIKEN, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Dheeraj Kumar","family":"Chaurasia","sequence":"first","affiliation":[{"name":"Supercomputing Facility for Bioinformatics & Computational Biology, Indian Institute of Technology Delhi, Hauz Khas, New Delhi, India, 110016"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Manpreet","family":"Singh","sequence":"first","affiliation":[{"name":"Supercomputing Facility for Bioinformatics & Computational Biology, Indian Institute of Technology Delhi, Hauz Khas, New Delhi, India, 110016"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"B","family":"Jayaram","sequence":"first","affiliation":[{"name":"Supercomputing Facility for Bioinformatics & Computational Biology, Indian Institute of Technology Delhi, Hauz Khas, New Delhi, India, 110016"},{"name":"Kusuma School of Biological Sciences, Indian Institute of Technology, Delhi, Hauz Khas, New Delhi, India, 110016"},{"name":"Department of Chemistry, Indian Institute of Technology, Delhi, Hauz Khas, New Delhi, India, 110016"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2020,6,16]]},"reference":[{"key":"2020061604231993600_ref1","first-page":"1","volume-title":"Confronting Plasmodium Vivax Malaria","author":"World Health Organization (WHO)","year":"2015"},{"key":"2020061604231993600_ref2","doi-asserted-by":"crossref","first-page":"87","DOI":"10.1016\/j.ijpara.2016.05.008","article-title":"Out of Africa: origins and evolution of the human malaria parasites Plasmodium falciparum and Plasmodium vivax","volume":"47","author":"Loy","year":"2017","journal-title":"Int. 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