{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,7,30]],"date-time":"2025-07-30T11:47:39Z","timestamp":1753876059141,"version":"3.41.2"},"reference-count":19,"publisher":"Oxford University Press (OUP)","license":[{"start":{"date-parts":[[2020,6,8]],"date-time":"2020-06-08T00:00:00Z","timestamp":1591574400000},"content-version":"vor","delay-in-days":159,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100003074","name":"Agencia Nacional de Promoci\u00f3n Cient\u00edfica y Tecnol\u00f3gica","doi-asserted-by":"publisher","award":["PICT 2015\/3367","PICT 2017\/1924"],"award-info":[{"award-number":["PICT 2015\/3367","PICT 2017\/1924"]}],"id":[{"id":"10.13039\/501100003074","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100002923","name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100002923","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2020,1,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Modern biology produces data at a staggering rate. Yet, much of these biological data is still isolated in the text, figures, tables and supplementary materials of articles. As a result, biological information created at great expense is significantly underutilised. The protein motif biology field does not have sufficient resources to curate the corpus of motif-related literature and, to date, only a fraction of the available articles have been curated. In this study, we develop a set of tools and a web resource, \u2018articles.ELM\u2019, to rapidly identify the motif literature articles pertinent to a researcher\u2019s interest. At the core of the resource is a manually curated set of about 8000 motif-related articles. These articles are automatically annotated with a range of relevant biological data allowing in-depth search functionality. Machine-learning article classification is used to group articles based on their similarity to manually curated motif classes in the Eukaryotic Linear Motif resource. Articles can also be manually classified within the resource. The \u2018articles.ELM\u2019 resource permits the rapid and accurate discovery of relevant motif articles thereby improving the visibility of motif literature and simplifying the recovery of valuable biological insights sequestered within scientific articles. Consequently, this web resource removes a critical bottleneck in scientific productivity for the motif biology field. Database URL: http:\/\/slim.icr.ac.uk\/articles\/<\/jats:p>","DOI":"10.1093\/database\/baaa040","type":"journal-article","created":{"date-parts":[[2020,5,26]],"date-time":"2020-05-26T19:10:20Z","timestamp":1590520220000},"source":"Crossref","is-referenced-by-count":5,"title":["The articles.ELM resource: simplifying access to protein linear motif literature by annotation, text-mining and classification"],"prefix":"10.1093","volume":"2020","author":[{"given":"N","family":"Palopoli","sequence":"first","affiliation":[{"name":"Departamento de Ciencia y Tecnolog\u00eda, Universidad Nacional de Quilmes, CONICET, Roque Saenz Pe\u00f1a 352, Bernal, Buenos Aires B1876BXD, Argentina"}]},{"given":"J A","family":"Iserte","sequence":"first","affiliation":[{"name":"Fundaci\u00f3n Instituto Leloir, Instituto de Investigaciones Bioqu\u00edmicas de Buenos Aires, CONICET, Av. Patricias Argentinas 435, Ciudad de Buenos Aires C1405BWE, Argentina"}]},{"given":"L B","family":"Chemes","sequence":"first","affiliation":[{"name":"Instituto de Investigaciones Biotecnol\u00f3gicas, Universidad Nacional de General San Mart\u00edn, IIB-INTECH-CONICET, Av. 25 de Mayo y Francia, San Mart\u00edn, Buenos Aires B1650, Argentina"}]},{"given":"C","family":"Marino-Buslje","sequence":"first","affiliation":[{"name":"Fundaci\u00f3n Instituto Leloir, Instituto de Investigaciones Bioqu\u00edmicas de Buenos Aires, CONICET, Av. Patricias Argentinas 435, Ciudad de Buenos Aires C1405BWE, Argentina"}]},{"given":"G","family":"Parisi","sequence":"first","affiliation":[{"name":"Departamento de Ciencia y Tecnolog\u00eda, Universidad Nacional de Quilmes, CONICET, Roque Saenz Pe\u00f1a 352, Bernal, Buenos Aires B1876BXD, Argentina"}]},{"given":"T J","family":"Gibson","sequence":"first","affiliation":[{"name":"Structural and Computational Biology Unit, European Molecular Biology Laboratory, Meyerhofstra\u00dfe 1, Heidelberg 69117, Germany"}]},{"given":"N E","family":"Davey","sequence":"first","affiliation":[{"name":"Division of Cancer Biology, The Institute of Cancer Research, 237 Fulham Road, London SW3 6JB, UK"}]}],"member":"286","published-online":{"date-parts":[[2020,6,8]]},"reference":[{"key":"2020060723142840400_ref1","doi-asserted-by":"crossref","first-page":"D408","DOI":"10.1093\/nar\/gkw985","article-title":"HIPPIE v2.0: driving the functional characterization of protein\u2013protein interaction networks","volume":"45","author":"Alanis-Lobato","year":"2017","journal-title":"Nucleic Acids Res."},{"volume-title":"Natural Language Processing with Python","year":"2009","author":"Bird","key":"2020060723142840400_ref2"},{"key":"2020060723142840400_ref3","doi-asserted-by":"crossref","first-page":"268","DOI":"10.1039\/C1MB05231D","article-title":"Attributes of short linear motifs","volume":"8","author":"Davey","year":"2012","journal-title":"Mol. 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