{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,23]],"date-time":"2025-10-23T21:04:51Z","timestamp":1761253491619,"version":"3.41.2"},"reference-count":31,"publisher":"Oxford University Press (OUP)","license":[{"start":{"date-parts":[[2020,11,28]],"date-time":"2020-11-28T00:00:00Z","timestamp":1606521600000},"content-version":"vor","delay-in-days":332,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"name":"Australian Grain Research and Development Corporation","award":["GRDC 9176507"],"award-info":[{"award-number":["GRDC 9176507"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2020,11,28]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Barley (Hordeum vulgare L.) is one of the first domesticated grain crops and represents the fourth most important cereal source for human and animal consumption. BarleyVarDB is a database of barley genomic variation. It can be publicly accessible through the website at http:\/\/146.118.64.11\/BarleyVar. This database mainly provides three sets of information. First, there are 57\u2009754\u2009224 single nuclear polymorphisms (SNPs) and 3\u2009600\u2009663 insertions or deletions (InDels) included in BarleyVarDB, which were identified from high-coverage whole genome sequencing of 21 barley germplasm, including 8 wild barley accessions from 3 barley evolutionary original centers and 13 barley landraces from different continents. Second, it uses the latest barley genome reference and its annotation information publicly accessible, which has been achieved by the International Barley Genome Sequencing Consortium (IBSC). Third, 522\u2009212 whole genome-wide microsatellites\/simple sequence repeats (SSRs) were also included in this database, which were identified in the reference barley pseudo-molecular genome sequence. Additionally, several useful web-based applications are provided including JBrowse, BLAST and Primer3. Users can design PCR primers to asses polymorphic variants deposited in this database and use a user-friendly interface for accessing the barley reference genome. We envisage that the BarleyVarDB will benefit the barley genetic research community by providing access to all publicly available barley genomic variation information and barley reference genome as well as providing them with an ultra-high density of SNP and InDel markers for molecular breeding and identification of functional genes with important agronomic traits in barley.<\/jats:p>\n               <jats:p>Database URL: http:\/\/146.118.64.11\/BarleyVar<\/jats:p>","DOI":"10.1093\/database\/baaa091","type":"journal-article","created":{"date-parts":[[2020,9,16]],"date-time":"2020-09-16T12:18:32Z","timestamp":1600258712000},"source":"Crossref","is-referenced-by-count":14,"title":["BarleyVarDB: a database of barley genomic variation"],"prefix":"10.1093","volume":"2020","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-0158-4442","authenticated-orcid":false,"given":"Cong","family":"Tan","sequence":"first","affiliation":[{"name":"Western Barley Genetics Alliance, Agricultural Sciences, College of Science, Health, Engineering and Education, Murdoch University, 90 South Street, Murdoch, WA 6150, Australia"}]},{"given":"Brett","family":"Chapman","sequence":"additional","affiliation":[{"name":"Western Barley Genetics Alliance, Agricultural Sciences, College of Science, Health, Engineering and Education, Murdoch University, 90 South Street, Murdoch, WA 6150, Australia"}]},{"given":"Penghao","family":"Wang","sequence":"additional","affiliation":[{"name":"Western Barley Genetics Alliance, Agricultural Sciences, College of Science, Health, Engineering and Education, Murdoch University, 90 South Street, Murdoch, WA 6150, Australia"}]},{"given":"Qisen","family":"Zhang","sequence":"additional","affiliation":[{"name":"Australian Export Grains Innovation Centre, 3 Baron-Hay Court, South Perth, WA6151, Australia"}]},{"given":"Gaofeng","family":"Zhou","sequence":"additional","affiliation":[{"name":"Department of Primary Industries and Regional Development, Government of Western Australia, 3 Baron-Hay Court, South Perth, WA 6151, Australia"}]},{"given":"Xiao-qi","family":"Zhang","sequence":"additional","affiliation":[{"name":"Western Barley Genetics Alliance, Agricultural Sciences, College of Science, Health, Engineering and Education, Murdoch University, 90 South Street, Murdoch, WA 6150, Australia"}]},{"given":"Roberto A","family":"Barrero","sequence":"additional","affiliation":[{"name":"eResearch Office, Queensland University of Technology, 2 George St, Brisbane, QLD 4001, Australia"}]},{"given":"Matthew I","family":"Bellgard","sequence":"additional","affiliation":[{"name":"eResearch Office, Queensland University of Technology, 2 George St, Brisbane, QLD 4001, Australia"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9653-2700","authenticated-orcid":false,"given":"Chengdao","family":"Li","sequence":"additional","affiliation":[{"name":"Western Barley Genetics Alliance, Agricultural Sciences, College of Science, Health, Engineering and Education, Murdoch University, 90 South Street, Murdoch, WA 6150, Australia"},{"name":"Department of Primary Industries and Regional Development, Government of Western Australia, 3 Baron-Hay Court, South Perth, WA 6151, Australia"}]}],"member":"286","published-online":{"date-parts":[[2020,11,28]]},"reference":[{"key":"2020112808564787300_R1","doi-asserted-by":"crossref","DOI":"10.1038\/nrg2165-c3","article-title":"A unified classification system for eukaryotic transposable elements should reflect their phylogeny","volume":"10","author":"Seberg","year":"2009","journal-title":"Nat. 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