{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,4]],"date-time":"2026-06-04T10:56:32Z","timestamp":1780570592675,"version":"3.54.1"},"reference-count":38,"publisher":"Oxford University Press (OUP)","license":[{"start":{"date-parts":[[2020,12,31]],"date-time":"2020-12-31T00:00:00Z","timestamp":1609372800000},"content-version":"vor","delay-in-days":365,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"name":"GREEN-IT - Bioresources for Sustainability","award":["UIDB\/04551\/2020"],"award-info":[{"award-number":["UIDB\/04551\/2020"]}]},{"name":"BioData.pt - Infraestrutura Portuguesa de Dados Biol\u00f3gicos","award":["22231\/01\/SAICT\/2016"],"award-info":[{"award-number":["22231\/01\/SAICT\/2016"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2020,12,31]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Quercus suber (cork oak) is an evergreen tree native to the Mediterranean basin, which plays a key role in the ecology and economy of this area. Over the last decades, this species has gone through an observable decline, mostly due to environmental factors. Deciphering the mechanisms of cork oak\u2019s response to the environment and getting a deep insight into its biology are crucial to counteract biotic and abiotic stresses compromising the stability of a unique ecosystem. In the light of these setbacks, the publication of the genome in 2018 was a major step towards understanding the genetic make-up of this species. In an effort to integrate this information in a comprehensive, accessible and intuitive format, we have developed The Cork Oak Genome Database Portal (CorkOakDB). The CorkOakDB is supported by the BioData.pt e-infrastructure, the Portuguese ELIXIR node for biological data. The portal gives public access to search and explore the curated genomic and transcriptomic data on this species. Moreover, CorkOakDB provides a user-friendly interface and functional tools to help the research community take advantage of the increased accessibility to genomic information. A study case is provided to highlight the functionalities of the portal. CorkOakDB guarantees the update, curation and data collection, aiming to collect data besides the genetic\/genomic information, in order to become the main repository in cork oak research.<\/jats:p>\n               <jats:p>Database URL: \u00a0http:\/\/corkoakdb.org\/<\/jats:p>","DOI":"10.1093\/database\/baaa114","type":"journal-article","created":{"date-parts":[[2020,12,12]],"date-time":"2020-12-12T06:04:13Z","timestamp":1607753053000},"source":"Crossref","is-referenced-by-count":15,"title":["CorkOakDB\u2014The Cork Oak Genome Database Portal"],"prefix":"10.1093","volume":"2020","author":[{"given":"Cirenia","family":"Arias-Baldrich","sequence":"first","affiliation":[{"name":"Instituto Gulbenkian de Ci\u00eancia, Rua da Quinta Grande, Oeiras 2780-156, Lisboa, Portugal"},{"name":"Department of Biological and Medical Sciences, Oxford Brookes University, Headington Campus, Oxford OX3 0BP, UK"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-1864-0105","authenticated-orcid":false,"given":"Marta Contreiras","family":"Silva","sequence":"additional","affiliation":[{"name":"Instituto de Tecnologia Qu\u00edmica e Biol\u00f3gica Ant\u00f3nio Xavier, Universidade NOVA de Lisboa, Av. da Rep\u00fablica, Oeiras 2780-157, Lisboa, Portugal"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Filippo","family":"Bergeretti","sequence":"additional","affiliation":[{"name":"Instituto de Tecnologia Qu\u00edmica e Biol\u00f3gica Ant\u00f3nio Xavier, Universidade NOVA de Lisboa, Av. da Rep\u00fablica, Oeiras 2780-157, Lisboa, Portugal"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"In\u00eas","family":"Chaves","sequence":"additional","affiliation":[{"name":"Instituto de Tecnologia Qu\u00edmica e Biol\u00f3gica Ant\u00f3nio Xavier, Universidade NOVA de Lisboa, Av. da Rep\u00fablica, Oeiras 2780-157, Lisboa, Portugal"},{"name":"Instituto de Biologia Experimental Tecnol\u00f3gica (iBET), Av. da Rep\u00fablica, 2780-157 Oeiras, Lisboa, Portugal"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"C\u00e9lia","family":"Miguel","sequence":"additional","affiliation":[{"name":"Instituto de Biologia Experimental Tecnol\u00f3gica (iBET), Av. da Rep\u00fablica, 2780-157 Oeiras, Lisboa, Portugal"},{"name":"Biosystems & Integrative Sciences Institute (BioISI), Faculdade de Ci\u00eancias, Universidade de Lisboa, Campo Grande, Lisboa 1749-016, Portugal"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6679-3811","authenticated-orcid":false,"given":"Nelson J M","family":"Saibo","sequence":"additional","affiliation":[{"name":"Instituto de Tecnologia Qu\u00edmica e Biol\u00f3gica Ant\u00f3nio Xavier, Universidade NOVA de Lisboa, Av. da Rep\u00fablica, Oeiras 2780-157, Lisboa, Portugal"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Daniel","family":"Sobral","sequence":"additional","affiliation":[{"name":"Instituto Gulbenkian de Ci\u00eancia, Rua da Quinta Grande, Oeiras 2780-156, Lisboa, Portugal"},{"name":"UCIBIO, Departamento de Ci\u00eancias da Vida, Faculdade de Ci\u00eancias e Tecnologia, Universidade NOVA de Lisboa, Campus de Caparica, Caparica 2825-149, Set\u00fabal, Portugal"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Daniel","family":"Faria","sequence":"additional","affiliation":[{"name":"Instituto Gulbenkian de Ci\u00eancia, Rua da Quinta Grande, Oeiras 2780-156, Lisboa, Portugal"},{"name":"INESC-ID- Instituto de Engenharia de Sistemas e Computadores, Investiga\u00e7\u00e3o e Desenvolvimento, Rua Alves Redol, Lisboa 1000-029, Portugal"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-5626-0619","authenticated-orcid":false,"given":"Pedro M","family":"Barros","sequence":"additional","affiliation":[{"name":"Instituto de Tecnologia Qu\u00edmica e Biol\u00f3gica Ant\u00f3nio Xavier, Universidade NOVA de Lisboa, Av. da Rep\u00fablica, Oeiras 2780-157, Lisboa, Portugal"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2020,12,31]]},"reference":[{"key":"2021013007153903600_R1","doi-asserted-by":"crossref","first-page":"1441","DOI":"10.1111\/1365-2745.12618","article-title":"Quercus suber dieback alters soil respiration and nutrient availability in Mediterranean forests","volume":"104","author":"Avila","year":"2016","journal-title":"J. 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