{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,7,30]],"date-time":"2025-07-30T11:48:14Z","timestamp":1753876094135,"version":"3.41.2"},"reference-count":41,"publisher":"Oxford University Press (OUP)","license":[{"start":{"date-parts":[[2022,8,31]],"date-time":"2022-08-31T00:00:00Z","timestamp":1661904000000},"content-version":"vor","delay-in-days":242,"URL":"https:\/\/creativecommons.org\/licenses\/by-nc\/4.0\/"}],"funder":[{"name":"Sub-project of the National Key Research and Development Program of China","award":["2018YFD1000503"],"award-info":[{"award-number":["2018YFD1000503"]}]},{"name":"Special project of The Key Laboratory for Crop Production and Intelligent Agriculture of Yunnan Province","award":["202105AG070007"],"award-info":[{"award-number":["202105AG070007"]}]},{"name":"The Major Scienceand Technology Projects in Yunnan Province","award":["202202AE090021"],"award-info":[{"award-number":["202202AE090021"]}]},{"name":"Key Project of Applied Basic Research Program of Yunnan Province","award":["2015FA024"],"award-info":[{"award-number":["2015FA024"]}]},{"name":"ESI Discipline Promotion Program of Yunnan Agricultural University","award":["2019YNAUESIMS01"],"award-info":[{"award-number":["2019YNAUESIMS01"]}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["31560417"],"award-info":[{"award-number":["31560417"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["31960451"],"award-info":[{"award-number":["31960451"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Biological resources digital development and application project","award":["202002AA100007"],"award-info":[{"award-number":["202002AA100007"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2022,8,31]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Erianthus fulvus (TaxID: 154759) is a valuable germplasm resource in sugarcane breeding and research and has excellent agronomic traits, such as drought resistance, cold resistance, barren tolerance and high brix. With a stable chromosome number (2n\u2009=\u200920) and a small genome (0.9\u2009Gb), it is an ideal candidate for research on sugarcane. Next-generation sequencing technology has enabled a growing number of studies to focus on genomics. Due to the large amount of omics data available, a centralized platform is necessary for ensuring the consistency, independence and maintainability of these large-scale datasets through storage, analysis and integration. Here, we present a comprehensive database for the E. fulvus genome, EfGD. By using the new high-quality reference genome and its annotations, the EfGD provides the largest whole-genome sequencing reference dataset for E. fulvus, which archives 27\u2009165 protein-coding genes and 55\u2009564\u2009488 SNPs from 202 newly resequenced genomes. Furthermore, we created a user-friendly graphical interface for visualizing genomic diversity, population structure and evolution and provided other tools on an open platform.<\/jats:p>\n               <jats:p>Database URL: https:\/\/efgenome.ynau.edu.cn<\/jats:p>","DOI":"10.1093\/database\/baac076","type":"journal-article","created":{"date-parts":[[2022,8,31]],"date-time":"2022-08-31T07:38:26Z","timestamp":1661931506000},"source":"Crossref","is-referenced-by-count":3,"title":["EfGD: the <i>Erianthus fulvus<\/i> genome database"],"prefix":"10.1093","volume":"2022","author":[{"given":"Zhenfeng","family":"Qian","sequence":"first","affiliation":[{"name":"The Key Laboratory for Crop Production and Intelligent Agriculture of Yunnan Province, Yunnan Agricultural University , No. 95 Jinhei Road, Kunming 650201, China"},{"name":"College of Agronomy and Biotechnology, Yunnan Agricultural University , No. 95 Jinhei Road, Kunming 650201, China"},{"name":"Sugarcane Research Institute, Yunnan Agricultural University , No. 95 Jinhei Road, Kunming 650201, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3670-6657","authenticated-orcid":false,"given":"Xuzhen","family":"Li","sequence":"additional","affiliation":[{"name":"State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University , No. 95 Jinhei Road, Kunming 650201, China"},{"name":"College of Biological Big Data, Yunnan Agriculture University , Kunming, No. 95 Jinhei Road, Yunnan 650201, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Lilian","family":"He","sequence":"additional","affiliation":[{"name":"College of Agronomy and Biotechnology, Yunnan Agricultural University , No. 95 Jinhei Road, Kunming 650201, China"},{"name":"Sugarcane Research Institute, Yunnan Agricultural University , No. 95 Jinhei Road, Kunming 650201, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Shujie","family":"Gu","sequence":"additional","affiliation":[{"name":"College of Agronomy and Biotechnology, Yunnan Agricultural University , No. 95 Jinhei Road, Kunming 650201, China"},{"name":"Sugarcane Research Institute, Yunnan Agricultural University , No. 95 Jinhei Road, Kunming 650201, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Qingqing","family":"Shen","sequence":"additional","affiliation":[{"name":"College of Agronomy and Biotechnology, Yunnan Agricultural University , No. 95 Jinhei Road, Kunming 650201, China"},{"name":"Sugarcane Research Institute, Yunnan Agricultural University , No. 95 Jinhei Road, Kunming 650201, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Xibing","family":"Rao","sequence":"additional","affiliation":[{"name":"College of Agronomy and Biotechnology, Yunnan Agricultural University , No. 95 Jinhei Road, Kunming 650201, China"},{"name":"Sugarcane Research Institute, Yunnan Agricultural University , No. 95 Jinhei Road, Kunming 650201, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Rongqiong","family":"Zhang","sequence":"additional","affiliation":[{"name":"College of Agronomy and Biotechnology, Yunnan Agricultural University , No. 95 Jinhei Road, Kunming 650201, China"},{"name":"Sugarcane Research Institute, Yunnan Agricultural University , No. 95 Jinhei Road, Kunming 650201, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Yining","family":"Di","sequence":"additional","affiliation":[{"name":"College of Agronomy and Biotechnology, Yunnan Agricultural University , No. 95 Jinhei Road, Kunming 650201, China"},{"name":"Sugarcane Research Institute, Yunnan Agricultural University , No. 95 Jinhei Road, Kunming 650201, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Linyan","family":"Xie","sequence":"additional","affiliation":[{"name":"College of Agronomy and Biotechnology, Yunnan Agricultural University , No. 95 Jinhei Road, Kunming 650201, China"},{"name":"Sugarcane Research Institute, Yunnan Agricultural University , No. 95 Jinhei Road, Kunming 650201, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Xianhong","family":"Wang","sequence":"additional","affiliation":[{"name":"The Key Laboratory for Crop Production and Intelligent Agriculture of Yunnan Province, Yunnan Agricultural University , No. 95 Jinhei Road, Kunming 650201, China"},{"name":"College of Agronomy and Biotechnology, Yunnan Agricultural University , No. 95 Jinhei Road, Kunming 650201, China"},{"name":"Sugarcane Research Institute, Yunnan Agricultural University , No. 95 Jinhei Road, Kunming 650201, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Shuying","family":"Chen","sequence":"additional","affiliation":[{"name":"College of Agronomy and Biotechnology, Yunnan Agricultural University , No. 95 Jinhei Road, Kunming 650201, China"},{"name":"Sugarcane Research Institute, Yunnan Agricultural University , No. 95 Jinhei Road, Kunming 650201, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Yang","family":"Dong","sequence":"additional","affiliation":[{"name":"State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University , No. 95 Jinhei Road, Kunming 650201, China"},{"name":"College of Biological Big Data, Yunnan Agriculture University , Kunming, No. 95 Jinhei Road, Yunnan 650201, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Fusheng","family":"Li","sequence":"additional","affiliation":[{"name":"The Key Laboratory for Crop Production and Intelligent Agriculture of Yunnan Province, Yunnan Agricultural University , No. 95 Jinhei Road, Kunming 650201, China"},{"name":"College of Agronomy and Biotechnology, Yunnan Agricultural University , No. 95 Jinhei Road, Kunming 650201, China"},{"name":"Sugarcane Research Institute, Yunnan Agricultural University , No. 95 Jinhei Road, Kunming 650201, China"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2022,8,31]]},"reference":[{"key":"2022083107380973800_R1","doi-asserted-by":"publisher","DOI":"10.1201\/9780429321702","volume-title":"Agribusiness as the Future of Agriculture: The Sugarcane Industry under Climate Change in the Southeast Mediterranean","author":"Hamada","year":"2020"},{"key":"2022083107380973800_R2","doi-asserted-by":"publisher","first-page":"29","DOI":"10.3969\/j.issn.1005-3395.2004.01.005","article-title":"Geographical distribution of Saccharinae (Gramineae)","volume":"12","author":"Yu","year":"2004","journal-title":"J. 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J. Agric. Res."},{"key":"2022083107380973800_R6","first-page":"11","article-title":"Investigations and collections of wild germplasm plants related to sugarcane in China","volume":"1","author":"He","year":"1994","journal-title":"Sugarcane"},{"key":"2022083107380973800_R7","first-page":"6","article-title":"Analysis of genetic diversity for germplasm resources of Erianthus fulvus","volume":"12","author":"Ying","year":"2013","journal-title":"Chin. Acad. Agric. Sci."},{"key":"2022083107380973800_R8","doi-asserted-by":"publisher","first-page":"97","DOI":"10.11924\/j.issn.1000-6850.casb14120014","article-title":"Morphological diversity of wild sugarcane species Erianthus fulvus","volume":"31","author":"Tian","year":"2015","journal-title":"Chin. Agric. Sci. 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