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The inconsistency in IDs impedes the integration of various types of biological data. To resolve the problem, we developed MantaID, a data-driven, machine learning\u2013based approach that automates identifying IDs on a large scale. The MantaID model\u2019s prediction accuracy was proven to be 99%, and it correctly and effectively predicted 100,000 ID entries within 2\u2009min. MantaID supports the discovery and exploitation of ID from large quantities of databases (e.g. up to 542 biological databases). An easy-to-use freely available open-source software R package, a user-friendly web application and application programming interfaces were also developed for MantaID to improve applicability. To our knowledge, MantaID is the first tool that enables an automatic, quick, accurate and comprehensive identification of large quantities of IDs and can therefore be used as a starting point to facilitate the complex assimilation and aggregation of biological data across diverse databases.<\/jats:p>","DOI":"10.1093\/database\/baad028","type":"journal-article","created":{"date-parts":[[2023,5,11]],"date-time":"2023-05-11T02:36:41Z","timestamp":1683772601000},"source":"Crossref","is-referenced-by-count":2,"title":["MantaID: a machine learning\u2013based tool to automate the identification of biological database IDs"],"prefix":"10.1093","volume":"2023","author":[{"given":"Zhengpeng","family":"Zeng","sequence":"first","affiliation":[{"name":"Department of Pharmacy, College of Biology, Hunan University , No. 27, Tianma Road, Changsha 410082, P.R. 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