{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,26]],"date-time":"2026-06-26T12:06:18Z","timestamp":1782475578429,"version":"3.54.5"},"reference-count":42,"publisher":"Oxford University Press (OUP)","license":[{"start":{"date-parts":[[2023,7,6]],"date-time":"2023-07-06T00:00:00Z","timestamp":1688601600000},"content-version":"vor","delay-in-days":186,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100004608","name":"Natural Science Foundation of Jiangsu Province","doi-asserted-by":"publisher","award":["BK20210397"],"award-info":[{"award-number":["BK20210397"]}],"id":[{"id":"10.13039\/501100004608","id-type":"DOI","asserted-by":"publisher"}]},{"name":"seed industry promotion project of Jiangsu","award":["JBGS(2021)022"],"award-info":[{"award-number":["JBGS(2021)022"]}]},{"DOI":"10.13039\/501100012166","name":"National Key Research and Development Program of China","doi-asserted-by":"publisher","award":["2022YFF1003100-02"],"award-info":[{"award-number":["2022YFF1003100-02"]}],"id":[{"id":"10.13039\/501100012166","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100012246","name":"Priority Academic Program Development of Jiangsu Higher Education Institutions","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100012246","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100012226","name":"Fundamental Research Funds for the Central Universities","doi-asserted-by":"publisher","award":["JCQY201901"],"award-info":[{"award-number":["JCQY201901"]}],"id":[{"id":"10.13039\/501100012226","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100007540","name":"Jiangsu Agriculture Science and Technology Innovation Fund","doi-asserted-by":"crossref","award":["CX(22)2025"],"award-info":[{"award-number":["CX(22)2025"]}],"id":[{"id":"10.13039\/100007540","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["31830081 32172511"],"award-info":[{"award-number":["31830081 32172511"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"name":"guidance foundation of Hainan Institute of Nanjing Agricultural University","award":["NAUSY-MS08"],"award-info":[{"award-number":["NAUSY-MS08"]}]},{"DOI":"10.13039\/501100010038","name":"Earmarked Fund for China Agriculture Research System","doi-asserted-by":"publisher","award":["CARS-28"],"award-info":[{"award-number":["CARS-28"]}],"id":[{"id":"10.13039\/501100010038","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100004608","name":"Natural Science Foundation of Jiangsu Province","doi-asserted-by":"publisher","award":["BK20210397"],"award-info":[{"award-number":["BK20210397"]}],"id":[{"id":"10.13039\/501100004608","id-type":"DOI","asserted-by":"publisher"}]},{"name":"seed industry promotion project of Jiangsu","award":["JBGS(2021)022"],"award-info":[{"award-number":["JBGS(2021)022"]}]},{"DOI":"10.13039\/501100012166","name":"National Key Research and Development Program of China","doi-asserted-by":"publisher","award":["2022YFF1003100-02"],"award-info":[{"award-number":["2022YFF1003100-02"]}],"id":[{"id":"10.13039\/501100012166","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100012246","name":"Priority Academic Program Development of Jiangsu Higher Education Institutions","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100012246","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100012226","name":"Fundamental Research Funds for the Central Universities","doi-asserted-by":"publisher","award":["JCQY201901"],"award-info":[{"award-number":["JCQY201901"]}],"id":[{"id":"10.13039\/501100012226","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100007540","name":"Jiangsu Agriculture Science and Technology Innovation Fund","doi-asserted-by":"crossref","award":["CX(22)2025"],"award-info":[{"award-number":["CX(22)2025"]}],"id":[{"id":"10.13039\/100007540","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["31830081 32172511"],"award-info":[{"award-number":["31830081 32172511"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"name":"guidance foundation of Hainan Institute of Nanjing Agricultural University","award":["NAUSY-MS08"],"award-info":[{"award-number":["NAUSY-MS08"]}]},{"DOI":"10.13039\/501100010038","name":"Earmarked Fund for China Agriculture Research System","doi-asserted-by":"publisher","award":["CARS-28"],"award-info":[{"award-number":["CARS-28"]}],"id":[{"id":"10.13039\/501100010038","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2023,7,6]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Pear (Pyrus ssp.) belongs to Rosaceae and is an important fruit tree widely cultivated around the world. Currently, challenges to cope with the burgeoning sets of multiomics data are rapidly increasing. Here, we constructed the Pear Multiomics Database (PearMODB) by integrating genome, transcriptome, epigenome and population variation data, and aimed to provide a portal for accessing and analyzing pear multiomics data. A variety of online tools were built including gene search, BLAST, JBrowse, expression heatmap, synteny analysis and primer design. The information of DNA methylation sites and single-nucleotide polymorphisms can be retrieved through the custom JBrowse, providing an opportunity to explore the genetic polymorphisms linked to phenotype variation. Moreover, different gene families involving transcription factors, transcription regulators and disease resistance (nucleotide-binding site leucine-rich repeat) were identified and compiled for quick search. In particular, biosynthetic gene clusters (BGCs) were identified in pear genomes, and specialized webpages were set up to show detailed information of BGCs, laying a foundation for studying metabolic diversity among different pear varieties. Overall, PearMODB provides an important platform for pear genomics, genetics and breeding studies.<\/jats:p>\n               <jats:p>Database URL http:\/\/pearomics.njau.edu.cn<\/jats:p>","DOI":"10.1093\/database\/baad050","type":"journal-article","created":{"date-parts":[[2023,7,6]],"date-time":"2023-07-06T18:06:59Z","timestamp":1688666819000},"source":"Crossref","is-referenced-by-count":14,"title":["PearMODB: a multiomics database for\u00a0pear (<i>Pyrus<\/i>) genomics, genetics and\u00a0breeding study"],"prefix":"10.1093","volume":"2023","author":[{"given":"Jian","family":"Hu","sequence":"first","affiliation":[{"name":"Sanya Institute of Nanjing Agricultural University, State Key Laboratory of Crop Genetics & Germplasm Enhancement and Utilization, Nanjing Agricultural University , No.1 Weigang, Nanjing 210095, China"},{"name":"Jiangsu Engineering Research Center for Pear, Nanjing Agricultural University , Nanjing 210095, China"},{"name":"College of Horticulture, Nanjing Agricultural University , Nanjing 210095, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Baisha","family":"Huang","sequence":"additional","affiliation":[{"name":"Sanya Institute of Nanjing Agricultural University, State Key Laboratory of Crop Genetics & Germplasm Enhancement and Utilization, Nanjing Agricultural University , No.1 Weigang, Nanjing 210095, China"},{"name":"Jiangsu Engineering Research Center for Pear, Nanjing Agricultural University , Nanjing 210095, China"},{"name":"College of Horticulture, Nanjing Agricultural University , Nanjing 210095, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Hao","family":"Yin","sequence":"additional","affiliation":[{"name":"Sanya Institute of Nanjing Agricultural University, State Key Laboratory of Crop Genetics & Germplasm Enhancement and Utilization, Nanjing Agricultural University , No.1 Weigang, Nanjing 210095, China"},{"name":"Jiangsu Engineering Research Center for Pear, Nanjing Agricultural University , Nanjing 210095, China"},{"name":"College of Horticulture, Nanjing Agricultural University , Nanjing 210095, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3800-8932","authenticated-orcid":false,"given":"Kaijie","family":"Qi","sequence":"additional","affiliation":[{"name":"Sanya Institute of Nanjing Agricultural University, State Key Laboratory of Crop Genetics & Germplasm Enhancement and Utilization, Nanjing Agricultural University , No.1 Weigang, Nanjing 210095, China"},{"name":"Jiangsu Engineering Research Center for Pear, Nanjing Agricultural University , Nanjing 210095, China"},{"name":"College of Horticulture, Nanjing Agricultural University , Nanjing 210095, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yuanyuan","family":"Jia","sequence":"additional","affiliation":[{"name":"Sanya Institute of Nanjing Agricultural University, State Key Laboratory of Crop Genetics & Germplasm Enhancement and Utilization, Nanjing Agricultural University , No.1 Weigang, Nanjing 210095, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Zhihua","family":"Xie","sequence":"additional","affiliation":[{"name":"Sanya Institute of Nanjing Agricultural University, State Key Laboratory of Crop Genetics & Germplasm Enhancement and Utilization, Nanjing Agricultural University , No.1 Weigang, Nanjing 210095, China"},{"name":"Jiangsu Engineering Research Center for Pear, Nanjing Agricultural University , Nanjing 210095, China"},{"name":"College of Horticulture, Nanjing Agricultural University , Nanjing 210095, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yuan","family":"Gao","sequence":"additional","affiliation":[{"name":"College of Horticulture, Nanjing Agricultural University , Nanjing 210095, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Hongxiang","family":"Li","sequence":"additional","affiliation":[{"name":"Sanya Institute of Nanjing Agricultural University, State Key Laboratory of Crop Genetics & Germplasm Enhancement and Utilization, Nanjing Agricultural University , No.1 Weigang, Nanjing 210095, China"},{"name":"Jiangsu Engineering Research Center for Pear, Nanjing Agricultural University , Nanjing 210095, China"},{"name":"College of Horticulture, Nanjing Agricultural University , Nanjing 210095, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Qionghou","family":"Li","sequence":"additional","affiliation":[{"name":"Sanya Institute of Nanjing Agricultural University, State Key Laboratory of Crop Genetics & Germplasm Enhancement and Utilization, Nanjing Agricultural University , No.1 Weigang, Nanjing 210095, China"},{"name":"Jiangsu Engineering Research Center for Pear, Nanjing Agricultural University , Nanjing 210095, China"},{"name":"College of Horticulture, Nanjing Agricultural University , Nanjing 210095, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Zewen","family":"Wang","sequence":"additional","affiliation":[{"name":"Sanya Institute of Nanjing Agricultural University, State Key Laboratory of Crop Genetics & Germplasm Enhancement and Utilization, Nanjing Agricultural University , No.1 Weigang, Nanjing 210095, China"},{"name":"Jiangsu Engineering Research Center for Pear, Nanjing Agricultural University , Nanjing 210095, China"},{"name":"College of Horticulture, Nanjing Agricultural University , Nanjing 210095, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ying","family":"Zou","sequence":"additional","affiliation":[{"name":"Sanya Institute of Nanjing Agricultural University, State Key Laboratory of Crop Genetics & Germplasm Enhancement and Utilization, Nanjing Agricultural University , No.1 Weigang, Nanjing 210095, China"},{"name":"Jiangsu Engineering Research Center for Pear, Nanjing Agricultural University , Nanjing 210095, China"},{"name":"College of Horticulture, Nanjing Agricultural University , Nanjing 210095, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-1835-1824","authenticated-orcid":false,"given":"Shaoling","family":"Zhang","sequence":"additional","affiliation":[{"name":"Sanya Institute of Nanjing Agricultural University, State Key Laboratory of Crop Genetics & Germplasm Enhancement and Utilization, Nanjing Agricultural University , No.1 Weigang, Nanjing 210095, China"},{"name":"Jiangsu Engineering Research Center for Pear, Nanjing Agricultural University , Nanjing 210095, China"},{"name":"College of Horticulture, Nanjing Agricultural University , Nanjing 210095, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xin","family":"Qiao","sequence":"additional","affiliation":[{"name":"Sanya Institute of Nanjing Agricultural University, State Key Laboratory of Crop Genetics & Germplasm Enhancement and Utilization, Nanjing Agricultural University , No.1 Weigang, Nanjing 210095, China"},{"name":"Jiangsu Engineering Research Center for Pear, Nanjing Agricultural University , Nanjing 210095, China"},{"name":"College of Horticulture, Nanjing Agricultural University , Nanjing 210095, China"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2023,7,6]]},"reference":[{"key":"2023070618063538600_R1","doi-asserted-by":"crossref","first-page":"5","DOI":"10.1007\/s00606-007-0539-9","article-title":"Phylogeny and\u00a0classification of\u00a0Rosaceae","volume":"266","author":"Potter","year":"2007","journal-title":"Plant Syst. Evol."},{"key":"2023070618063538600_R2","doi-asserted-by":"crossref","first-page":"396","DOI":"10.1101\/gr.144311.112","article-title":"The genome of\u00a0the pear (Pyrus bretschneideri Rehd.)","volume":"23","author":"Wu","year":"2013","journal-title":"Genome Res."},{"key":"2023070618063538600_R3","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0092644","article-title":"The draft genome sequence of\u00a0European pear (Pyrus communis L. \u2018Bartlett\u2019)","volume":"9,","author":"Chagne","year":"2014","journal-title":"PLoS One"},{"key":"2023070618063538600_R4","doi-asserted-by":"crossref","DOI":"10.1093\/gigascience\/giz138","article-title":"Pseudo-chromosome-length genome assembly of\u00a0a double haploid \u201cBartlett\u201d pear (Pyrus communis L.)","volume":"8,","author":"Linsmith","year":"2019","journal-title":"Gigascience"},{"key":"2023070618063538600_R5","doi-asserted-by":"crossref","first-page":"581","DOI":"10.1111\/pbi.13226","article-title":"De novo assembly of\u00a0a wild pear (Pyrus betuleafolia) genome","volume":"18","author":"Dong","year":"2020","journal-title":"Plant Biotechnol. J."},{"key":"2023070618063538600_R6","doi-asserted-by":"crossref","DOI":"10.1038\/s41597-019-0291-3","article-title":"A de novo genome assembly of\u00a0the dwarfing pear rootstock Zhongai 1","volume":"6","author":"Ou","year":"2019","journal-title":"Sci. Data"},{"key":"2023070618063538600_R7","doi-asserted-by":"crossref","DOI":"10.1093\/dnares\/dsab001","article-title":"Chromosome-scale genome assembly of\u00a0Japanese pear (Pyrus pyrifolia) variety \u2018Nijisseiki\u2019","volume":"28,","author":"Shirasawa","year":"2021","journal-title":"DNA Res."},{"key":"2023070618063538600_R8","doi-asserted-by":"crossref","DOI":"10.1038\/s41438-021-00632-w","article-title":"High-quality genome assembly of\u00a0\u2018Cuiguan\u2019 pear (Pyrus pyrifolia) as a reference genome for\u00a0identifying regulatory genes and\u00a0epigenetic modifications responsible for\u00a0bud dormancy","volume":"8,","author":"Gao","year":"2021","journal-title":"Hortic. Res."},{"key":"2023070618063538600_R9","article-title":"Building a foundation for\u00a0gene family analysis in\u00a0Rosaceae genomes with a novel workflow: a case study in\u00a0Pyrus architecture genes","volume":"13","author":"Zhang","year":"2022","journal-title":"Front. Plant Sci."},{"key":"2023070618063538600_R10","doi-asserted-by":"crossref","first-page":"1889","DOI":"10.1101\/gr.251033.119","article-title":"Single-pollen-cell sequencing for\u00a0gamete-based phased diploid genome assembly in\u00a0plants","volume":"29","author":"Shi","year":"2019","journal-title":"Genome Res."},{"key":"2023070618063538600_R11","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/s13059-018-1452-y","article-title":"Diversification and\u00a0independent domestication of\u00a0Asian and\u00a0European pears","volume":"19","author":"Wu","year":"2018","journal-title":"Genome Biol."},{"key":"2023070618063538600_R12","article-title":"Genome-wide association studies provide insights into the genetic determination of\u00a0fruit traits of\u00a0pear","volume":"12","author":"Zhang","year":"2021","journal-title":"Nat. Commun."},{"key":"2023070618063538600_R13","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/s13059-021-02531-8","article-title":"A systems genetics approach reveals PbrNSC as a regulator of\u00a0lignin and\u00a0cellulose biosynthesis in\u00a0stone cells of\u00a0pear fruit","volume":"22","author":"Wang","year":"2021","journal-title":"Genome Biol."},{"key":"2023070618063538600_R14","doi-asserted-by":"crossref","DOI":"10.1038\/hortres.2017.15","article-title":"Genotyping-by-sequencing of\u00a0pear (Pyrus spp.) accessions unravels novel patterns of\u00a0genetic diversity and\u00a0selection footprints","volume":"4,","author":"Kumar","year":"2017","journal-title":"Hortic. Res."},{"key":"2023070618063538600_R15","doi-asserted-by":"crossref","DOI":"10.1038\/s41438-018-0110-6","article-title":"Unbiased subgenome evolution following a recent whole-genome duplication in\u00a0pear (Pyrus bretschneideri Rehd.)","volume":"6,","author":"Li","year":"2019","journal-title":"Hortic. Res."},{"key":"2023070618063538600_R16","first-page":"1","article-title":"Distinct transcriptome profiles reveal gene expression patterns during fruit development and\u00a0maturation in\u00a0five main cultivated species of\u00a0pear (Pyrus L.)","volume":"6","author":"Zhang","year":"2016","journal-title":"Sci. Rep."},{"key":"2023070618063538600_R17","doi-asserted-by":"crossref","first-page":"428","DOI":"10.1016\/j.scienta.2018.09.040","article-title":"Transcriptomic analysis of\u00a0bagging-treated \u2018Pingguo\u2019 pear shows that MYB4-like1, MYB4-like2, MYB1R1 and\u00a0WDR involved in\u00a0anthocyanin biosynthesis are up-regulated in\u00a0fruit peels in\u00a0response to light","volume":"244","author":"Liu","year":"2019","journal-title":"Sci. Hortic."},{"key":"2023070618063538600_R18","doi-asserted-by":"crossref","DOI":"10.1038\/s41598-020-65275-8","article-title":"Evidence for\u00a0the involvement of\u00a0vernalization-related genes in\u00a0the regulation of\u00a0cold-induced ripening in\u00a0\u2018D\u2019Anjou\u2019 and\u00a0\u2018Bartlett\u2019 pear fruit","volume":"10,","author":"Hewitt","year":"2020","journal-title":"Sci. Rep."},{"key":"2023070618063538600_R19","doi-asserted-by":"crossref","first-page":"2114","DOI":"10.1093\/bioinformatics\/btu170","article-title":"Trimmomatic: a flexible trimmer for\u00a0Illumina sequence data","volume":"30","author":"Bolger","year":"2014","journal-title":"Bioinformatics"},{"key":"2023070618063538600_R20","doi-asserted-by":"crossref","first-page":"525","DOI":"10.1038\/nbt.3519","article-title":"Near-optimal probabilistic RNA-seq quantification","volume":"34","author":"Bray","year":"2016","journal-title":"Nat. Biotechnol."},{"key":"2023070618063538600_R21","doi-asserted-by":"crossref","first-page":"D309","DOI":"10.1093\/nar\/gky1085","article-title":"eggNOG 5.0: a hierarchical, functionally and\u00a0phylogenetically annotated orthology resource based on\u00a05090 organisms and\u00a02502 viruses","volume":"47","author":"Huerta-Cepas","year":"2018","journal-title":"Nucleic Acids Res."},{"key":"2023070618063538600_R22","doi-asserted-by":"crossref","first-page":"59","DOI":"10.1038\/nmeth.3176","article-title":"Fast and\u00a0sensitive protein alignment using DIAMOND","volume":"12","author":"Buchfink","year":"2015","journal-title":"Nat. Methods"},{"key":"2023070618063538600_R23","doi-asserted-by":"crossref","DOI":"10.1093\/nar\/gkr1293","article-title":"MCScanX: a toolkit for\u00a0detection and\u00a0evolutionary analysis of\u00a0gene synteny and\u00a0collinearity","volume":"40","author":"Wang","year":"2012","journal-title":"Nucleic Acids Res."},{"key":"2023070618063538600_R24","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/s13059-019-1650-2","article-title":"Gene duplication and\u00a0evolution in\u00a0recurring polyploidization-diploidization cycles in\u00a0plants","volume":"20","author":"Qiao","year":"2019","journal-title":"Genome Biol."},{"key":"2023070618063538600_R25","doi-asserted-by":"crossref","first-page":"1667","DOI":"10.1016\/j.molp.2016.09.014","article-title":"iTAK: a program for\u00a0genome-wide prediction and\u00a0classification of\u00a0plant transcription factors, transcriptional regulators, and\u00a0protein kinases","volume":"9","author":"Zheng","year":"2016","journal-title":"Mol. Plant"},{"key":"2023070618063538600_R26","doi-asserted-by":"crossref","first-page":"D822","DOI":"10.1093\/nar\/gkp805","article-title":"PlnTFDB: updated content and\u00a0new features of\u00a0the plant transcription factor database","volume":"38","author":"P\u00e9rez-Rodr\u00edguez","year":"2009","journal-title":"Nucleic Acids Res."},{"key":"2023070618063538600_R27","doi-asserted-by":"crossref","first-page":"D1182","DOI":"10.1093\/nar\/gkt1016","article-title":"PlantTFDB 3.0: a portal for\u00a0the functional and\u00a0evolutionary study of\u00a0plant transcription factors","volume":"42","author":"Jin","year":"2013","journal-title":"Nucleic Acids Res."},{"key":"2023070618063538600_R28","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/1471-2105-14-321","article-title":"PlantTFcat: an online plant transcription factor and\u00a0transcriptional regulator categorization and\u00a0analysis tool","volume":"14","author":"Dai","year":"2013","journal-title":"BMC Bioinform."},{"key":"2023070618063538600_R29","doi-asserted-by":"crossref","first-page":"D1118","DOI":"10.1093\/nar\/gkq1120","article-title":"AGRIS: the Arabidopsis Gene Regulatory Information Server, an update","volume":"39","author":"Yilmaz","year":"2010","journal-title":"Nucleic Acids Res."},{"key":"2023070618063538600_R30","doi-asserted-by":"crossref","first-page":"2619","DOI":"10.1098\/rstb.2012.0003","article-title":"Diversity, classification and\u00a0function of\u00a0the plant protein kinase superfamily","volume":"367","author":"Lehti-Shiu","year":"2012","journal-title":"Philos. Trans. R. Soc. B Biol. Sci."},{"key":"2023070618063538600_R31","first-page":"205","article-title":"A new generation of\u00a0homology search tools based on\u00a0probabilistic inference","volume":"23","author":"Eddy","year":"2009","journal-title":"Genom. Inform."},{"key":"2023070618063538600_R32","doi-asserted-by":"crossref","first-page":"403","DOI":"10.1016\/S0022-2836(05)80360-2","article-title":"Basic local alignment search tool","volume":"215","author":"Altschul","year":"1990","journal-title":"J. Mol. Biol."},{"key":"2023070618063538600_R33","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/s12870-014-0253-z","article-title":"The plasticity of\u00a0NBS resistance genes in\u00a0sorghum is driven by multiple evolutionary processes","volume":"14","author":"Mace","year":"2014","journal-title":"BMC Plant Biol."},{"key":"2023070618063538600_R34","doi-asserted-by":"crossref","DOI":"10.1093\/database\/bar044","article-title":"Tripal: a construction toolkit for\u00a0online genome databases","volume":"2011,","author":"Ficklin","year":"2011","journal-title":"Database"},{"key":"2023070618063538600_R35","doi-asserted-by":"crossref","DOI":"10.1093\/database\/bat075","article-title":"Tripal v1.1: a standards-based toolkit for\u00a0construction of\u00a0online genetic and\u00a0genomic databases","volume":"2013,","author":"Sanderson","year":"2013","journal-title":"Database"},{"key":"2023070618063538600_R36","doi-asserted-by":"crossref","DOI":"10.1093\/bib\/bbab238","article-title":"Tripal, a community update after 10 years of\u00a0supporting open source, standards-based genetic, genomic and\u00a0breeding databases","volume":"22","author":"Staton","year":"2021","journal-title":"Brief. Bioinformatics"},{"key":"2023070618063538600_R37","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/s13059-016-0924-1","article-title":"JBrowse: a dynamic web platform for\u00a0genome visualization and\u00a0analysis","volume":"17","author":"Buels","year":"2016","journal-title":"Genome Biol."},{"key":"2023070618063538600_R38","doi-asserted-by":"crossref","first-page":"365","DOI":"10.1385\/1-59259-192-2:365","volume-title":"Bioinformatics Methods and Protocols","author":"Rozen","year":"1999"},{"key":"2023070618063538600_R39","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/s12864-020-07226-1","article-title":"Contrasting genetic variation and\u00a0positive selection followed the divergence of NBS-encoding genes in\u00a0Asian and\u00a0European pears","volume":"21","author":"Sun","year":"2020","journal-title":"BMC Genom."},{"key":"2023070618063538600_R40","doi-asserted-by":"crossref","first-page":"W55","DOI":"10.1093\/nar\/gkx305","article-title":"plantiSMASH: automated identification, annotation and expression analysis of\u00a0plant biosynthetic gene clusters","volume":"45","author":"Kautsar","year":"2017","journal-title":"Nucleic Acids Res."},{"key":"2023070618063538600_R41","doi-asserted-by":"crossref","first-page":"D1137","DOI":"10.1093\/nar\/gky1000","article-title":"15 years of\u00a0GDR: new data and\u00a0functionality in\u00a0the Genome Database for\u00a0Rosaceae","volume":"47","author":"Jung","year":"2018","journal-title":"Nucleic Acids Res."},{"key":"2023070618063538600_R42","doi-asserted-by":"crossref","first-page":"599","DOI":"10.1016\/j.molp.2023.01.011","article-title":"A large-scale proteogenomic atlas of\u00a0pear","volume":"16","author":"Wang","year":"2023","journal-title":"Mol. Plant"}],"container-title":["Database"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/database\/article-pdf\/doi\/10.1093\/database\/baad050\/50834946\/baad050.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/database\/article-pdf\/doi\/10.1093\/database\/baad050\/50834946\/baad050.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,7,6]],"date-time":"2023-07-06T18:08:11Z","timestamp":1688666891000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/database\/article\/doi\/10.1093\/database\/baad050\/7220647"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2023,1,1]]},"references-count":42,"URL":"https:\/\/doi.org\/10.1093\/database\/baad050","relation":{},"ISSN":["1758-0463"],"issn-type":[{"value":"1758-0463","type":"electronic"}],"subject":[],"published-other":{"date-parts":[[2023,1,1]]},"published":{"date-parts":[[2023,1,1]]},"article-number":"baad050"}}