{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,5,29]],"date-time":"2026-05-29T20:34:03Z","timestamp":1780086843632,"version":"3.54.0"},"reference-count":37,"publisher":"Oxford University Press (OUP)","license":[{"start":{"date-parts":[[2023,11,16]],"date-time":"2023-11-16T00:00:00Z","timestamp":1700092800000},"content-version":"vor","delay-in-days":319,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/100005825","name":"National Institute of Food and Agriculture","doi-asserted-by":"publisher","award":["Award #2020-67013-31460"],"award-info":[{"award-number":["Award #2020-67013-31460"]}],"id":[{"id":"10.13039\/100005825","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100005825","name":"National Institute of Food and Agriculture","doi-asserted-by":"publisher","award":["Award #2020-67013-31460"],"award-info":[{"award-number":["Award #2020-67013-31460"]}],"id":[{"id":"10.13039\/100005825","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2023,11,16]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Diploid A-genome wheat (einkorn wheat) presents a nutrition-rich option as an ancient grain crop and a resource for the improvement of bread wheat against abiotic and biotic stresses. Realizing the importance of this wheat species, reference-level assemblies of two einkorn wheat accessions were generated (wild and domesticated). This work reports an einkorn genome database that provides an interface to the cereals research community to perform comparative genomics, applied genetics and breeding research. It features queries for annotated genes, the use of a recent genome browser release, and the ability to search for sequence alignments using a modern BLAST interface. Other features include a comparison of reference einkorn assemblies with other wheat cultivars through genomic synteny visualization and an alignment visualization tool for BLAST results. Altogether, this resource will help wheat research and breeding.<\/jats:p>\n               <jats:p>Database URL \u00a0https:\/\/wheat.pw.usda.gov\/GG3\/pangenome<\/jats:p>","DOI":"10.1093\/database\/baad079","type":"journal-article","created":{"date-parts":[[2023,11,16]],"date-time":"2023-11-16T16:31:29Z","timestamp":1700152289000},"source":"Crossref","is-referenced-by-count":4,"title":["An online database for\u00a0einkorn wheat to aid in\u00a0gene discovery and\u00a0functional genomics studies"],"prefix":"10.1093","volume":"2023","author":[{"given":"Parva Kumar","family":"Sharma","sequence":"first","affiliation":[{"name":"Department of Plant Science and Landscape Architecture, University of Maryland , Fieldhouse Dr. College Park, MD 20742, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Hanin Ibrahim","family":"Ahmed","sequence":"additional","affiliation":[{"name":"Plant Science Program, Biological and Environmental Science and Engineering Division, King Abdullah 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USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"St\u00e9phane","family":"Cauet","sequence":"additional","affiliation":[{"name":"INRAE, CNRGV French Plant Genomic Resource Center , 24 Chemin de Borde Rouge, Castanet Tolosan F-31320, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3361-4730","authenticated-orcid":false,"given":"Nathalie","family":"Rodde","sequence":"additional","affiliation":[{"name":"INRAE, CNRGV French Plant Genomic Resource Center , 24 Chemin de Borde Rouge, Castanet Tolosan F-31320, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Charlotte","family":"Cravero","sequence":"additional","affiliation":[{"name":"INRAE, CNRGV French Plant Genomic Resource Center , 24 Chemin de Borde Rouge, Castanet Tolosan F-31320, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Caroline","family":"Callot","sequence":"additional","affiliation":[{"name":"INRAE, CNRGV French Plant Genomic Resource Center , 24 Chemin de Borde Rouge, Castanet Tolosan F-31320, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Inderjit Singh","family":"Yadav","sequence":"additional","affiliation":[{"name":"Department of Plant Science and Landscape Architecture, University of Maryland , Fieldhouse Dr. College Park, MD 20742, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Nagarajan","family":"Kathiresan","sequence":"additional","affiliation":[{"name":"Supercomputing Core Lab, King Abdullah University of Science and Technology (KAUST) , 4700 KAUST, Thuwal 23955-6900, Saudi Arabia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Naveenkumar","family":"Athiyannan","sequence":"additional","affiliation":[{"name":"Plant Science Program, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST) , 4700 KAUST, Thuwal 23955-6900, Saudi Arabia"},{"name":"Center for Desert Agriculture, KAUST , 4700 KAUST, Thuwal, Kingdom of Saudi Arabia 23955-6900, Saudi Arabia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ricardo H","family":"Ramirez-Gonzalez","sequence":"additional","affiliation":[{"name":"John Innes Centre John Innes Centre, Norwich Research Park, Norwich NR4 7UH, UK"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9814-1770","authenticated-orcid":false,"given":"Cristobal","family":"Uauy","sequence":"additional","affiliation":[{"name":"John Innes Centre John Innes Centre, Norwich Research Park, Norwich NR4 7UH, UK"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Thomas","family":"Wicker","sequence":"additional","affiliation":[{"name":"Department of Plant and Microbial Biology, University of Zurich , 107, Zurich, Zollikerstrasse CH-8008, Switzerland"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Michael","family":"Abrouk","sequence":"additional","affiliation":[{"name":"Plant Science Program, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST) , 4700 KAUST, Thuwal 23955-6900, Saudi Arabia"},{"name":"Center for Desert Agriculture, KAUST , 4700 KAUST, Thuwal, Kingdom of Saudi Arabia 23955-6900, Saudi Arabia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yong Q","family":"Gu","sequence":"additional","affiliation":[{"name":"United States Department of Agriculture\u2014Agricultural Research Service, Western Regional Research Center, Crop Improvement and Genetics Research Unit , 800 Buchanan St., Albany, CA 94710, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jesse","family":"Poland","sequence":"additional","affiliation":[{"name":"Plant Science Program, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST) , 4700 KAUST, Thuwal 23955-6900, Saudi Arabia"},{"name":"Center for Desert Agriculture, KAUST , 4700 KAUST, Thuwal, Kingdom of Saudi Arabia 23955-6900, Saudi Arabia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Simon G","family":"Krattinger","sequence":"additional","affiliation":[{"name":"Plant Science Program, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST) , 4700 KAUST, Thuwal 23955-6900, Saudi Arabia"},{"name":"Center for Desert Agriculture, KAUST , 4700 KAUST, Thuwal, Kingdom of Saudi Arabia 23955-6900, Saudi Arabia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9160-2052","authenticated-orcid":false,"given":"Gerard R","family":"Lazo","sequence":"additional","affiliation":[{"name":"United States Department of Agriculture\u2014Agricultural Research Service, 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