{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,23]],"date-time":"2026-10-23T20:04:18Z","timestamp":1792785858655,"version":"4.5.0"},"reference-count":42,"publisher":"Oxford University Press (OUP)","license":[{"start":{"date-parts":[[2024,6,3]],"date-time":"2024-06-03T00:00:00Z","timestamp":1717372800000},"content-version":"vor","delay-in-days":154,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"name":"Jiangxi Province","award":["20192BCBL23028"],"award-info":[{"award-number":["20192BCBL23028"]}]},{"DOI":"10.13039\/501100005230","name":"Natural Science Foundation of Chongqing","doi-asserted-by":"publisher","award":["CSTB2023NSCQ-MSX0851"],"award-info":[{"award-number":["CSTB2023NSCQ-MSX0851"]}],"id":[{"id":"10.13039\/501100005230","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Jiangxi Youth Science Foundation","award":["20202ACBL215008"],"award-info":[{"award-number":["20202ACBL215008"]}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["32100333 32170457"],"award-info":[{"award-number":["32100333 32170457"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Jiangxi Province","award":["20192BCBL23028"],"award-info":[{"award-number":["20192BCBL23028"]}]},{"DOI":"10.13039\/501100005230","name":"Natural Science Foundation of Chongqing","doi-asserted-by":"publisher","award":["CSTB2023NSCQ-MSX0851"],"award-info":[{"award-number":["CSTB2023NSCQ-MSX0851"]}],"id":[{"id":"10.13039\/501100005230","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Jiangxi Youth Science Foundation","award":["20202ACBL215008"],"award-info":[{"award-number":["20202ACBL215008"]}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["32100333 32170457"],"award-info":[{"award-number":["32100333 32170457"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2024,6,3]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:p>We launched the initial version of FishTEDB in 2018, which aimed to establish an open-source, user-friendly, data-rich transposable element (TE) database. Over the past 5\u2009years, FishTEDB 1.0 has gained approximately 10\u2009000 users, accumulating more than 450\u2009000 interactions. With the unveiling of extensive fish genome data and the increasing emphasis on TE research, FishTEDB needs to extend the richness of data and functions. To achieve the above goals, we introduced 33 new fish species to FishTEDB 2.0, encompassing a wide array of fish belonging to 48 orders. To make the updated database more functional, we added a genome browser to visualize the positional relationship between TEs and genes and the estimated TE insertion time in different species. In conclusion, we released a new version of the fish TE database, FishTEDB 2.0, designed to assist researchers in the future study of TE functions and promote the progress of biological theories related to TEs.<\/jats:p>\n                  <jats:p>Database URL: https:\/\/www.fishtedb.com\/<\/jats:p>","DOI":"10.1093\/database\/baae044","type":"journal-article","created":{"date-parts":[[2024,5,15]],"date-time":"2024-05-15T00:45:27Z","timestamp":1715733927000},"source":"Crossref","is-referenced-by-count":16,"title":["FishTEDB 2.0: an update fish transposable element (TE) database with new functions to facilitate TE research"],"prefix":"10.1093","volume":"2024","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-4648-2493","authenticated-orcid":false,"given":"Feng","family":"Shao","sequence":"first","affiliation":[{"name":"Key Laboratory of Freshwater Fish Reproduction and Development (Ministry of Education), Southwest University School of Life Sciences , 2 Tiansheng Road, Chongqing 400715, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Minzhi","family":"Zeng","sequence":"additional","affiliation":[{"name":"Key Laboratory of Freshwater Fish Reproduction and Development (Ministry of Education), Southwest University School of Life Sciences , 2 Tiansheng Road, Chongqing 400715, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xiaofei","family":"Xu","sequence":"additional","affiliation":[{"name":"School of Computing Technologies, RMIT University , 124 La Trobe Street, Victoria 3000, Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Huahao","family":"Zhang","sequence":"additional","affiliation":[{"name":"College of Pharmacy and Life Science, Jiujiang University , 551 Qianjin East Road, Jiujiang 332005, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8810-2025","authenticated-orcid":false,"given":"Zuogang","family":"Peng","sequence":"additional","affiliation":[{"name":"Key Laboratory of Freshwater Fish Reproduction and Development (Ministry of Education), Southwest University School of Life Sciences , 2 Tiansheng Road, Chongqing 400715, China"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2024,6,3]]},"reference":[{"key":"2024062912232605400_R1","doi-asserted-by":"crossref","first-page":"226","DOI":"10.5808\/GI.2012.10.4.226","article-title":"Transposable elements: no more \u2018Junk DNA\u2019","volume":"10","author":"Kim","year":"2012","journal-title":"Genomics Inform."},{"key":"2024062912232605400_R2","doi-asserted-by":"crossref","first-page":"1085","DOI":"10.1534\/genetics.110.124180","article-title":"A brief history of the status of transposable elements: from junk DNA to major players in evolution","volume":"186","author":"Biemont","year":"2010","journal-title":"Genetics"},{"key":"2024062912232605400_R3","doi-asserted-by":"crossref","first-page":"1623","DOI":"10.1101\/gr.218149.116","article-title":"Transposable elements are the primary source of novelty in primate gene regulation","volume":"27","author":"Trizzino","year":"2017","journal-title":"Genome Res."},{"key":"2024062912232605400_R4","doi-asserted-by":"crossref","DOI":"10.1186\/s13059-018-1577-z","article-title":"Ten things you should know about transposable elements","volume":"19","author":"Bourque","year":"2018","journal-title":"Genome Biol."},{"key":"2024062912232605400_R5","doi-asserted-by":"crossref","first-page":"417","DOI":"10.1038\/s41576-019-0106-6","article-title":"Regulation of transposable elements by DNA modifications","volume":"20","author":"Deniz","year":"2019","journal-title":"Nat. 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