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It was created to facilitate the screening of high-throughput sequencing (HTS) data for the potential presence of viruses associated with notifiable disease. The database includes a single verified sequence (the exemplar species sequence, where relevant) for each of the 60 virus species across 21 viral families that are associated with or cause these notifiable diseases, as recognized by the World Organisation for Animal Health. The open-source ABGD on GitHub provides usage guidance documents and is intended to support building a culture in Australian HTS communities that promotes the use of quality-assured, standardized, and verified databases for Australia\u2019s national biosecurity interests. Future expansion of the database will include the addition of more strains or subtypes for highly variable viruses, viruses causing diseases of aquatic animals, and genomes of other types of pathogens associated with notifiable diseases, such as bacteria.<\/jats:p>\n               <jats:p>Database URL: https:\/\/github.com\/ausbiopathgenDB\/AustralianBiosecurityGenomicDatabase<\/jats:p>","DOI":"10.1093\/database\/baae084","type":"journal-article","created":{"date-parts":[[2024,8,28]],"date-time":"2024-08-28T20:19:28Z","timestamp":1724876368000},"source":"Crossref","is-referenced-by-count":3,"title":["The Australian Biosecurity Genomic Database: a new resource for high-throughput sequencing analysis based on the National Notifiable Disease List of Terrestrial Animals"],"prefix":"10.1093","volume":"2024","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-0919-568X","authenticated-orcid":false,"given":"Jana","family":"Batovska","sequence":"first","affiliation":[{"name":"Agriculture Victoria Research, AgriBio Centre for AgriBioscience , 5 Ring Road, Bundoora, Victoria 3083, Australia"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Natasha D","family":"Brohier","sequence":"additional","affiliation":[{"name":"Agriculture Victoria Research, AgriBio Centre for AgriBioscience , 5 Ring Road, Bundoora, Victoria 3083, Australia"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Peter T","family":"Mee","sequence":"additional","affiliation":[{"name":"Agriculture Victoria Research, AgriBio Centre for AgriBioscience , 5 Ring Road, Bundoora, Victoria 3083, Australia"},{"name":"School of Applied Systems Biology (SASB), La Trobe University , Bundoora, Melbourne, Victoria 3086, Australia"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Fiona E","family":"Constable","sequence":"additional","affiliation":[{"name":"Agriculture Victoria Research, AgriBio Centre for AgriBioscience , 5 Ring Road, Bundoora, Victoria 3083, Australia"},{"name":"School of Applied Systems Biology (SASB), La Trobe University , Bundoora, Melbourne, Victoria 3086, Australia"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Brendan C","family":"Rodoni","sequence":"additional","affiliation":[{"name":"Agriculture Victoria Research, AgriBio Centre for AgriBioscience , 5 Ring Road, Bundoora, Victoria 3083, Australia"},{"name":"School of Applied Systems Biology (SASB), La Trobe University , Bundoora, Melbourne, Victoria 3086, Australia"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Stacey E","family":"Lynch","sequence":"additional","affiliation":[{"name":"Agriculture Victoria Research, AgriBio Centre for AgriBioscience , 5 Ring Road, Bundoora, Victoria 3083, Australia"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2024,8,28]]},"reference":[{"key":"2024082908254100400_R1","article-title":"Animal Diseases","volume-title":"World Organisation for Animal Health","author":"WOAH","year":"2023"},{"key":"2024082908254100400_R2","article-title":"Terrestrial Animal Health Code","volume-title":"World Organisation for Animal Health","author":"WOAH","year":"2023"},{"key":"2024082908254100400_R3","article-title":"National Notifiable Disease List of Terrestrial Animals (April 2019)","volume-title":"Department of Agriculture, Fisheries and Forestry","author":"DAFF","year":"2023"},{"key":"2024082908254100400_R4","doi-asserted-by":"crossref","DOI":"10.1038\/s41598-019-55741-3","article-title":"Sensitivity and specificity of metatranscriptomics as an arbovirus surveillance tool","volume":"9","author":"Batovska","year":"2019","journal-title":"Sci Rep"},{"key":"2024082908254100400_R5","doi-asserted-by":"crossref","first-page":"3277","DOI":"10.1111\/tbed.13930","article-title":"An idiopathic upper alimentary tract ulcerative syndrome in weaned dairy calves in Victoria, Australia","volume":"68","author":"Hunnam","year":"2021","journal-title":"Transbound Emerg Dis"},{"key":"2024082908254100400_R6","doi-asserted-by":"crossref","first-page":"319","DOI":"10.1146\/annurev-pathmechdis-012418-012751","article-title":"Clinical metagenomic next-generation sequencing for pathogen detection","volume":"14","author":"Gu","year":"2019","journal-title":"Annu Rev Pathol"},{"key":"2024082908254100400_R7","doi-asserted-by":"crossref","first-page":"4699","DOI":"10.1093\/bioinformatics\/btaa586","article-title":"Detecting and correcting misclassified sequences in the large-scale public databases","volume":"36","author":"Bagheri","year":"2020","journal-title":"Bioinformatics"},{"key":"2024082908254100400_R8","article-title":"Chapter 3.3.8. 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