{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,16]],"date-time":"2026-01-16T20:29:03Z","timestamp":1768595343365,"version":"3.49.0"},"reference-count":23,"publisher":"Oxford University Press (OUP)","license":[{"start":{"date-parts":[[2025,1,11]],"date-time":"2025-01-11T00:00:00Z","timestamp":1736553600000},"content-version":"vor","delay-in-days":10,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2025,1,11]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>The HoloFood project used a hologenomic approach to understand the impact of host\u2013microbiota interactions on salmon and chicken production by analysing multiomic data, phenotypic characteristics, and associated metadata in response to novel feeds. The project\u2019s raw data, derived analyses, and metadata are deposited in public, open archives (BioSamples, European Nucleotide Archive, MetaboLights, and MGnify), so making use of these diverse data types may require access to multiple resources. This is especially complex where analysis pipelines produce derived outputs such as functional profiles or genome catalogues. The HoloFood Data Portal is a web resource that simplifies access to the project datasets. For example, users can conveniently access multiomic datasets derived from the same individual or retrieve host phenotypic data with a linked gut microbiome sample. Project-specific metagenome-assembled genome and viral catalogues are also provided, linking to broader datasets in MGnify. The portal stores only data necessary to provide these relationships, with possible linking to the underlying repositories. The portal showcases a model approach for how future multiomics datasets can be made available.<\/jats:p>\n               <jats:p>Database URL: \u00a0https:\/\/www.holofooddata.org<\/jats:p>","DOI":"10.1093\/database\/baae112","type":"journal-article","created":{"date-parts":[[2025,1,11]],"date-time":"2025-01-11T03:06:46Z","timestamp":1736564806000},"source":"Crossref","is-referenced-by-count":4,"title":["HoloFood Data Portal: holo-omic datasets for analysing host\u2013microbiota interactions in animal production"],"prefix":"10.1093","volume":"2025","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-4283-6135","authenticated-orcid":false,"given":"Alexander B","family":"Rogers","sequence":"first","affiliation":[{"name":"European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory , Wellcome Genome Campus, Hinxton, CB10 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(EMBL-EBI), European Molecular Biology Laboratory , Wellcome Genome Campus, Hinxton, CB10 1SD,","place":["UK"]}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2472-8317","authenticated-orcid":false,"given":"Bent","family":"Petersen","sequence":"additional","affiliation":[{"name":"Center for Evolutionary Hologenomics, Globe Institute, University of Copenhagen , \u00d8ster Farimagsgade 5, Copenhagen 1353,","place":["Denmark"]},{"name":"Centre of Excellence for Omics-Driven Computational Biodiscovery (COMBio), Faculty of Applied Sciences, AIMST University , Batu 3 1\/2, Jalan, Bukit Air Nasi, Bedong, Kedah 08100,","place":["Malaysia"]}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7710-8912","authenticated-orcid":false,"given":"Jacob A","family":"Rasmussen","sequence":"additional","affiliation":[{"name":"Center for Evolutionary Hologenomics, Globe Institute, University of Copenhagen , \u00d8ster 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