{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,1]],"date-time":"2025-10-01T15:33:48Z","timestamp":1759332828162,"version":"build-2065373602"},"reference-count":14,"publisher":"Oxford University Press (OUP)","license":[{"start":{"date-parts":[[2025,9,30]],"date-time":"2025-09-30T00:00:00Z","timestamp":1759190400000},"content-version":"vor","delay-in-days":272,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2025,1,18]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Bioontologies are core to many data management strategies, artificial intelligence and machine learning initiatives, and search functionality within many pharmaceutical companies. Despite their integral role, many bioontologies, along with their associated tools, are maintained predominantly by academia and their partners, government supported initiatives, and the general community. In this comment, we will dive into some of the reasons behind this trend and argue that there exists a mutual advantage for the life science industry, and pharmaceutical companies in particular, to actively contribute to the advancement of public ontologies and open-source tools. This benefit extends beyond ethical and moral considerations and aligns with strategic interests. Additionally, we will explore practical approaches for contributing, sharing our (Novo Nordisk\u2019s research and early development) experience in doing so.<\/jats:p>","DOI":"10.1093\/database\/baaf066","type":"journal-article","created":{"date-parts":[[2025,9,30]],"date-time":"2025-09-30T14:28:02Z","timestamp":1759242482000},"source":"Crossref","is-referenced-by-count":0,"title":["Navigating open-source waters: the pharmaceutical industry\u2019s role in bioontology development"],"prefix":"10.1093","volume":"2025","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-7258-9596","authenticated-orcid":false,"given":"Shawn Zheng Kai","family":"Tan","sequence":"first","affiliation":[{"name":"Novo Nordisk A\/S , Novo Nordisk Park 1, 2760 M\u00e5l\u00f8v ,","place":["Denmark"]}]},{"given":"Joshua Daniel","family":"Valdez","sequence":"additional","affiliation":[{"name":"Novo Nordisk A\/S , Novo Nordisk Park 1, 2760 M\u00e5l\u00f8v ,","place":["Denmark"]}]},{"given":"Saritha Vettikunnel","family":"Kuriakose","sequence":"additional","affiliation":[{"name":"Novo Nordisk A\/S , Novo Nordisk Park 1, 2760 M\u00e5l\u00f8v ,","place":["Denmark"]}]}],"member":"286","published-online":{"date-parts":[[2025,9,30]]},"reference":[{"key":"2025093010275780100_bib1","doi-asserted-by":"publisher","first-page":"160018","DOI":"10.1038\/sdata.2016.18","article-title":"The FAIR Guiding Principles for scientific data management and stewardship","volume":"3","author":"Wilkinson","year":"2016","journal-title":"Sci Data"},{"key":"2025093010275780100_bib2","doi-asserted-by":"crossref","first-page":"iyad031","DOI":"10.1093\/genetics\/iyad031","article-title":"The Gene Ontology knowledgebase in 2023","volume":"224","author":"Gene Ontology Consortium","year":"2023","journal-title":"Genetics"},{"key":"2025093010275780100_bib3","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1093\/nar\/gkn923","article-title":"Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists","volume":"37","author":"Huang","year":"2009","journal-title":"Nucleic Acids Res"},{"key":"2025093010275780100_bib14_200_192925","first-page":"D938","article-title":"The Monarch Initiative in 2024:\u00a0an analytic platform integrating phenotypes, genes and diseases across species","volume-title":"Nucleic Acids Res","author":"Putman","year":"2024"},{"key":"2025093010275780100_bib5","doi-asserted-by":"crossref","first-page":"50","DOI":"10.1038\/s41597-022-01886-2","article-title":"Brain Data Standards\u2014a method for building data-driven cell-type ontologies","volume":"10","author":"Tan","year":"2023","journal-title":"Sci. Data"},{"key":"2025093010275780100_bib6","doi-asserted-by":"publisher","first-page":"R5","DOI":"10.1186\/gb-2012-13-1-r5","article-title":"Uberon, an integrative multi-species anatomy ontology","volume":"13","author":"Mungall","year":"2012","journal-title":"Genome Biol"},{"key":"2025093010275780100_bib14_295_224125","doi-asserted-by":"publisher","first-page":"250610037","DOI":"10.48550\/arXiv.2506.10037","article-title":"The Cell Ontology in the age of single-cell omics","volume-title":"arXiv","author":"Tan"},{"key":"2025093010275780100_bib7","doi-asserted-by":"publisher","first-page":"44","DOI":"10.1186\/s13326-016-0088-7","article-title":"The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability","volume":"7","author":"Diehl","year":"2016","journal-title":"J Biomed Semant"},{"key":"2025093010275780100_bib8","doi-asserted-by":"publisher","first-page":"btad130","DOI":"10.1093\/bioinformatics\/btad130","article-title":"Prediction and curation of missing biomedical identifier mappings with Biomappings","volume":"39","author":"Hoyt","year":"2023","journal-title":"Bioinformatics"},{"key":"2025093010275780100_bib9","article-title":"Moving towards FAIR mappings and crosswalks","volume-title":"Proceedings of the Joint Ontology Workshops (JOWO) - Episode X: The Tukker Zomer of Ontology, and satellite events co located with the 14th International Conference on Formal Ontology in Information Systems (FOIS 2024)","author":"Mart\u00ednkov\u00e1","year":"2024"},{"key":"2025093010275780100_bib10","doi-asserted-by":"publisher","first-page":"baac087","DOI":"10.1093\/database\/baac087","article-title":"Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies","volume":"2022","author":"Matentzoglu","year":"2022","journal-title":"Database"},{"key":"2025093010275780100_bib11","doi-asserted-by":"publisher","first-page":"407","DOI":"10.1186\/s12859-019-3002-3","article-title":"ROBOT: a tool for automating ontology workflows","volume":"20","author":"Jackson","year":"2019","journal-title":"BMC Bioinf"},{"key":"2025093010275780100_bib12","doi-asserted-by":"publisher","first-page":"baac035","DOI":"10.1093\/database\/baac035","article-title":"A simple standard for sharing ontological mappings (SSSOM)","volume":"2022","author":"Matentzoglu","year":"2022","journal-title":"Database"},{"key":"2025093010275780100_bib13","doi-asserted-by":"publisher","first-page":"6","DOI":"10.1186\/s13326-025-00327-4","article-title":"Digital evolution: Novo Nordisk\u2019s shift to ontology-based data management","volume":"16","author":"Tan","year":"2025","journal-title":"J Biomed Semant"}],"container-title":["Database"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/database\/article-pdf\/doi\/10.1093\/database\/baaf066\/64443357\/baaf066.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/database\/article-pdf\/doi\/10.1093\/database\/baaf066\/64443357\/baaf066.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,9,30]],"date-time":"2025-09-30T14:28:03Z","timestamp":1759242483000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/database\/article\/doi\/10.1093\/database\/baaf066\/8268903"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025]]},"references-count":14,"URL":"https:\/\/doi.org\/10.1093\/database\/baaf066","relation":{},"ISSN":["1758-0463"],"issn-type":[{"type":"electronic","value":"1758-0463"}],"subject":[],"published-other":{"date-parts":[[2025]]},"published":{"date-parts":[[2025]]},"article-number":"baaf066"}}