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Functioning as alternative promoters, TEs can be reactivated to produce TE-initiated transcripts. In cancer, TE-initiated transcription may upregulate oncogene expression and generate novel tumour-specific antigens, which could serve as potential targets for immunotherapy. However, there remains a lack of comprehensive databases that systematically investigate TE-initiated transcription in cancer. To address this gap, we developed a deep learning-based method and identified 38\u2009995 TE-initiated transcripts across 33 cancer types from The Cancer Genome Atlas. Among these, 6203 were tumour-specifically expressed and strongly associated with the tumourigenesis. Using these annotations, we created TEITbase (http:\/\/teitbase.medbioinfo.org\/), a user-friendly database that provides researchers with tools to conduct various downstream analyses and investigations for TE-initiated transcripts, including 546 novel onco-exaptation events. The establishment of TEITbase provides new insights into transcriptional reprogramming in cancers and enables further investigation into the potential roles of TE-initiated transcripts in cancer diagnostics and therapeutic strategies.<\/jats:p>","DOI":"10.1093\/database\/baag025","type":"journal-article","created":{"date-parts":[[2026,5,7]],"date-time":"2026-05-07T11:46:24Z","timestamp":1778154384000},"source":"Crossref","is-referenced-by-count":1,"title":["TEITbase: a database for transposable element (TE)-initiated transcripts in human cancers"],"prefix":"10.1093","volume":"2026","author":[{"ORCID":"https:\/\/orcid.org\/0009-0001-5981-2279","authenticated-orcid":false,"given":"Yun","family":"Zhang","sequence":"first","affiliation":[{"name":"School of Basic Medical Sciences, Peking University Health Science Center Department of Medical Bioinformatics, , Beijing 100191 ,","place":["China"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7210-6638","authenticated-orcid":false,"given":"Jianqi","family":"She","sequence":"additional","affiliation":[{"name":"School of Basic Medical Sciences, Peking University Health Science Center Department of Microbiology & Infectious Disease Center, , Beijing 100191 ,","place":["China"]},{"name":"School of Basic Medical Sciences, Peking University Health Science Center Department of Radiation Medicine, , Beijing 100191 ,","place":["China"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4253-3564","authenticated-orcid":false,"given":"Xueyan","family":"Hu","sequence":"additional","affiliation":[{"name":"School of Basic Medical Sciences, Peking University Health Science Center Department of Microbiology & Infectious Disease Center, , Beijing 100191 ,","place":["China"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-0225-6512","authenticated-orcid":false,"given":"Yueqi","family":"Jin","sequence":"additional","affiliation":[{"name":"School of Basic Medical Sciences, Peking University Health Science Center Department of Medical Bioinformatics, , Beijing 100191 ,","place":["China"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7333-6822","authenticated-orcid":false,"given":"Changyu","family":"Tao","sequence":"additional","affiliation":[{"name":"Histology and Embryology, School of Basic Medical Sciences, Peking University Health Science Center Department of Human Anatomy, , Beijing 100191 ,","place":["China"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Minghao","family":"Du","sequence":"additional","affiliation":[{"name":"School of Basic Medical Sciences, Peking University Health Science Center Department of Microbiology & Infectious Disease Center, , Beijing 100191 ,","place":["China"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9526-2737","authenticated-orcid":false,"given":"Ence","family":"Yang","sequence":"additional","affiliation":[{"name":"School of Basic Medical Sciences, Peking University Health Science Center Department of Medical Bioinformatics, , Beijing 100191 ,","place":["China"]},{"name":"School of Basic Medical Sciences, Peking University Health Science Center Department of Microbiology & Infectious Disease Center, , Beijing 100191 ,","place":["China"]}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2026,5,19]]},"reference":[{"key":"2026071607014999300_bib1","doi-asserted-by":"publisher","first-page":"529","DOI":"10.1126\/science.161.3841.529","article-title":"Repeated sequences in DNA. 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