{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,5]],"date-time":"2026-02-05T04:52:03Z","timestamp":1770267123139,"version":"3.49.0"},"reference-count":39,"publisher":"Oxford University Press (OUP)","license":[{"start":{"date-parts":[[2016,10,3]],"date-time":"2016-10-03T00:00:00Z","timestamp":1475452800000},"content-version":"vor","delay-in-days":2832,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/2.0\/uk\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2009,1,1]]},"DOI":"10.1093\/database\/bap005","type":"journal-article","created":{"date-parts":[[2009,5,13]],"date-time":"2009-05-13T02:34:17Z","timestamp":1242182057000},"source":"Crossref","is-referenced-by-count":48,"title":["Gramene QTL database: development, content and applications"],"prefix":"10.1093","volume":"2009","author":[{"given":"Junjian","family":"Ni","sequence":"first","affiliation":[{"name":"Department of Plant Breeding and Genetics, Cornell University, Ithaca, NY 14853-1901, USA and 2Cold Spring Harbor Labs, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA"}]},{"given":"Anuradha","family":"Pujar","sequence":"additional","affiliation":[{"name":"Department of Plant Breeding and Genetics, Cornell University, Ithaca, NY 14853-1901, USA and 2Cold Spring Harbor Labs, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA"}]},{"given":"Ken","family":"Youens-Clark","sequence":"additional","affiliation":[{"name":"Department of Plant Breeding and Genetics, Cornell University, Ithaca, NY 14853-1901, USA and 2Cold Spring Harbor Labs, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA"}]},{"given":"Immanuel","family":"Yap","sequence":"additional","affiliation":[{"name":"Department of Plant Breeding and Genetics, Cornell University, Ithaca, NY 14853-1901, USA and 2Cold Spring Harbor Labs, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA"}]},{"given":"Pankaj","family":"Jaiswal","sequence":"additional","affiliation":[{"name":"Department of Plant Breeding and Genetics, Cornell University, Ithaca, NY 14853-1901, USA and 2Cold Spring Harbor Labs, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA"}]},{"given":"Isaak","family":"Tecle","sequence":"additional","affiliation":[{"name":"Department of Plant Breeding and Genetics, Cornell University, Ithaca, NY 14853-1901, USA and 2Cold Spring Harbor Labs, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA"}]},{"given":"Chih-Wei","family":"Tung","sequence":"additional","affiliation":[{"name":"Department of Plant Breeding and Genetics, Cornell University, Ithaca, NY 14853-1901, USA and 2Cold Spring Harbor Labs, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA"}]},{"given":"Liya","family":"Ren","sequence":"additional","affiliation":[{"name":"Department of Plant Breeding and Genetics, Cornell University, Ithaca, NY 14853-1901, USA and 2Cold Spring Harbor Labs, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA"}]},{"given":"William","family":"Spooner","sequence":"additional","affiliation":[{"name":"Department of Plant Breeding and Genetics, Cornell University, Ithaca, NY 14853-1901, USA and 2Cold Spring Harbor Labs, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA"}]},{"given":"Xuehong","family":"Wei","sequence":"additional","affiliation":[{"name":"Department of Plant Breeding and Genetics, Cornell University, Ithaca, NY 14853-1901, USA and 2Cold Spring Harbor Labs, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA"}]},{"given":"Shuly","family":"Avraham","sequence":"additional","affiliation":[{"name":"Department of Plant Breeding and Genetics, Cornell University, Ithaca, NY 14853-1901, USA and 2Cold Spring Harbor Labs, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA"}]},{"given":"Doreen","family":"Ware","sequence":"additional","affiliation":[{"name":"Department of Plant Breeding and Genetics, Cornell University, Ithaca, NY 14853-1901, USA and 2Cold Spring Harbor Labs, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA"}]},{"given":"Lincoln","family":"Stein","sequence":"additional","affiliation":[{"name":"Department of Plant Breeding and Genetics, Cornell University, Ithaca, NY 14853-1901, USA and 2Cold Spring Harbor Labs, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA"}]},{"given":"Susan","family":"McCouch","sequence":"additional","affiliation":[{"name":"Department of Plant Breeding and Genetics, Cornell University, Ithaca, NY 14853-1901, USA and 2Cold Spring Harbor Labs, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA"}]}],"member":"286","published-online":{"date-parts":[[2009,5,8]]},"reference":[{"key":"key\n\t\t\t\t20180618190818_B1","doi-asserted-by":"crossref","first-page":"1606","DOI":"10.1104\/pp.015248","article-title":"Gramene, a tool for grass genomics","volume":"130","author":"Ware","year":"2002","journal-title":"Plant Physiol."},{"key":"key\n\t\t\t\t20180618190818_B2","doi-asserted-by":"crossref","first-page":"D717","DOI":"10.1093\/nar\/gkj154","article-title":"Gramene: a bird's eye view of cereal genomes","volume":"34","author":"Jaiswal","year":"2006","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618190818_B3","doi-asserted-by":"crossref","first-page":"D947","DOI":"10.1093\/nar\/gkm968","article-title":"Gramene: a growing plant comparative genomics resource","volume":"36","author":"Liang","year":"2008","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618190818_B4","doi-asserted-by":"crossref","first-page":"859","DOI":"10.1094\/MPMI-21-7-0859","article-title":"A genome-wide meta-analysis of rice Blast resistance genes and quantitative trait loci provides new insights into partial and complete resistance","volume":"21","author":"Ballini","year":"2008","journal-title":"Mol. Plant Microbe Interact."},{"key":"key\n\t\t\t\t20180618190818_B5","doi-asserted-by":"crossref","first-page":"1996","DOI":"10.1073\/pnas.95.5.1996","article-title":"Quantitative trait loci and metabolic pathways","volume":"95","author":"McMullen","year":"1998","journal-title":"Proc. Natl Acad. Sci. USA"},{"key":"key\n\t\t\t\t20180618190818_B6","doi-asserted-by":"crossref","first-page":"213","DOI":"10.1016\/j.tplants.2006.03.006","article-title":"Believe it or not, QTLs are accurate","volume":"11","author":"Price","year":"2006","journal-title":"Trends Plant Sci."},{"key":"key\n\t\t\t\t20180618190818_B7","doi-asserted-by":"crossref","first-page":"e162","DOI":"10.1371\/journal.pgen.0030162","article-title":"Linking metabolic QTLs with network and cis-eQTLs controlling biosynthetic pathways","volume":"3","author":"Wentzell","year":"2007","journal-title":"PLoS Genet."},{"key":"key\n\t\t\t\t20180618190818_B8","doi-asserted-by":"crossref","first-page":"58","DOI":"10.1038\/nrg2025","article-title":"The mouse as a model for human biology: a resource guide for complex trait analysis","volume":"8","author":"Peters","year":"2007","journal-title":"Nat. Rev. Genet."},{"key":"key\n\t\t\t\t20180618190818_B9","doi-asserted-by":"crossref","first-page":"869","DOI":"10.1094\/MPMI-21-7-0869","article-title":"ARCHIPELAGO: a dedicated resource for exploiting past, present, and future genomic data on disease resistance regulation in rice","volume":"21","author":"Vergne","year":"2008","journal-title":"Mol. Plant Microbe Interact."},{"key":"key\n\t\t\t\t20180618190818_B10","doi-asserted-by":"crossref","first-page":"587","DOI":"10.1104\/pp.106.092825","article-title":"The plant structure ontology, a unified vocabulary of anatomy and morphology of a flowering plant","volume":"143","author":"Ilic","year":"2007","journal-title":"Plant Physiol."},{"key":"key\n\t\t\t\t20180618190818_B11","doi-asserted-by":"crossref","first-page":"414","DOI":"10.1104\/pp.106.085720","article-title":"Whole-plant growth stage ontology for angiosperms and its application in plant biology","volume":"142","author":"Pujar","year":"2006","journal-title":"Plant Physiol."},{"key":"key\n\t\t\t\t20180618190818_B12","doi-asserted-by":"crossref","first-page":"132","DOI":"10.1002\/cfg.156","article-title":"Gramene: development and integration of trait and gene ontologies for rice","volume":"3","author":"Jaiswal","year":"2002","journal-title":"Comp. Funct. Genomics"},{"key":"key\n\t\t\t\t20180618190818_B13","first-page":"301","article-title":"GrainGenes: a genomic database for triticeae and avena","volume-title":"Plant Bioinformatics: Methods and Protocols","author":"O'Sullivan","year":"2008"},{"key":"key\n\t\t\t\t20180618190818_B14","doi-asserted-by":"crossref","first-page":"D895","DOI":"10.1093\/nar\/gkl1048","article-title":"MaizeGDB\u2019s new data types, resources and activities","volume":"35","author":"Lawrence","year":"2007","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618190818_B15","doi-asserted-by":"crossref","first-page":"656","DOI":"10.1101\/gr.229202","article-title":"BLAT\u2013the BLAST-like alignment tool","volume":"12","author":"Kent","year":"2002","journal-title":"Genome Res."},{"key":"key\n\t\t\t\t20180618190818_B16","doi-asserted-by":"crossref","first-page":"D449","DOI":"10.1093\/nar\/gkm908","article-title":"The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations","volume":"36","author":"Avraham","year":"2008","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618190818_B17","doi-asserted-by":"crossref","first-page":"156","DOI":"10.1016\/j.pbi.2007.01.003","article-title":"Genetic architecture of complex traits in plants","volume":"10","author":"Holland","year":"2007","journal-title":"Curr. Opin. Plant Biol"},{"key":"key\n\t\t\t\t20180618190818_B18","doi-asserted-by":"crossref","first-page":"721","DOI":"10.1038\/335721a0","article-title":"Resolution of quantitative traits into Mendelian factors by using a complete linkage map of restriction fragment length polymorphisms","volume":"335","author":"Paterson","year":"1988","journal-title":"Nature"},{"key":"key\n\t\t\t\t20180618190818_B19","doi-asserted-by":"crossref","first-page":"130","DOI":"10.1038\/hdy.1996.117","article-title":"Association of quantitative trait loci for plant height with major dwarfing genes in rice","volume":"77","author":"Huang","year":"1996","journal-title":"Heredity"},{"key":"key\n\t\t\t\t20180618190818_B20","doi-asserted-by":"crossref","first-page":"14","DOI":"10.1094\/MPMI.2003.16.1.14","article-title":"Candidate defense genes from rice, barley, and maize and their association with qualitative and quantitative resistance in rice","volume":"16","author":"Ramalingam","year":"2003","journal-title":"Mol. Plant Microbe Interact."},{"key":"key\n\t\t\t\t20180618190818_B21","doi-asserted-by":"crossref","first-page":"561","DOI":"10.1046\/j.1365-313x.2000.00767.x","article-title":"T-DNA insertional mutagenesis for functional genomics in rice","volume":"22","author":"Jeon","year":"2000","journal-title":"Plant J"},{"key":"key\n\t\t\t\t20180618190818_B22","doi-asserted-by":"crossref","first-page":"7311","DOI":"10.1073\/pnas.0701954104","article-title":"It's elementary: enhancing Fe3+ reduction improves rice yields","volume":"104","author":"Guerinot","year":"2007","journal-title":"Proc. Natl Acad. Sci. USA"},{"key":"key\n\t\t\t\t20180618190818_B23","doi-asserted-by":"crossref","first-page":"415","DOI":"10.1111\/j.1365-313X.2004.02146.x","article-title":"OsYSL2 is a rice metal-nicotianamine transporter that is regulated by iron and expressed in the phloem","volume":"39","author":"Koike","year":"2004","journal-title":"Plant J."},{"key":"key\n\t\t\t\t20180618190818_B24","doi-asserted-by":"crossref","first-page":"366","DOI":"10.1111\/j.1365-313X.2007.03149.x","article-title":"The rice bHLH protein OsIRO2 is an essential regulator of the genes involved in Fe uptake under Fe-deficient conditions","volume":"51","author":"Ogo","year":"2007","journal-title":"Plant J."},{"key":"key\n\t\t\t\t20180618190818_B25","doi-asserted-by":"crossref","first-page":"2273","DOI":"10.1016\/j.febslet.2007.04.043","article-title":"Mining iron: iron uptake and transport in plants","volume":"581","author":"Kim","year":"2007","journal-title":"FEBS Lett."},{"key":"key\n\t\t\t\t20180618190818_B26","doi-asserted-by":"crossref","first-page":"815","DOI":"10.1104\/pp.104.3.815","article-title":"Iron: nutritious, noxious, and not readily available","volume":"104","author":"Guerinot","year":"1994","journal-title":"Plant Physiol."},{"key":"key\n\t\t\t\t20180618190818_B27","doi-asserted-by":"crossref","first-page":"43","DOI":"10.1016\/S0764-4469(99)80016-X","article-title":"Plant responses to metal toxicity","volume":"322","author":"Briat","year":"1999","journal-title":"C. R. Acad. Sci. III"},{"key":"key\n\t\t\t\t20180618190818_B28","doi-asserted-by":"crossref","first-page":"476","DOI":"10.1186\/1471-2164-8-476","article-title":"Microarray analysis of iron deficiency chlorosis in near-isogenic soybean lines","volume":"8","author":"O\u2019Rourke","year":"2007","journal-title":"BMC Genomics"},{"key":"key\n\t\t\t\t20180618190818_B29","doi-asserted-by":"crossref","first-page":"777","DOI":"10.1007\/s00122-008-0710-x","article-title":"Association mapping of iron deficiency chlorosis loci in soybean (Glycine max L. Merr.) advanced breeding lines","volume":"116","author":"Wang","year":"2008","journal-title":"Theor. Appl. Genet."},{"key":"key\n\t\t\t\t20180618190818_B30","doi-asserted-by":"crossref","first-page":"183","DOI":"10.1007\/s00299-007-0432-6","article-title":"Increased senescence-associated gene expression and lipid peroxidation induced by iron deficiency in rice roots","volume":"27","author":"Sperotto","year":"2008","journal-title":"Plant Cell Rep."},{"key":"key\n\t\t\t\t20180618190818_B31","doi-asserted-by":"crossref","first-page":"1399","DOI":"10.1007\/s00299-007-0330-y","article-title":"Iron deficiency in rice shoots: identification of novel induced genes using RDA and possible relation to leaf senescence","volume":"26","author":"Sperotto","year":"2007","journal-title":"Plant Cell Rep."},{"key":"key\n\t\t\t\t20180618190818_B32","doi-asserted-by":"crossref","first-page":"552","DOI":"10.1093\/genetics\/8.6.552","article-title":"The association of size differences with seed-coat pattern and pigmentation in Phaseolus vulgaris","volume":"8","author":"Sax","year":"1923","journal-title":"Genetics"},{"key":"key\n\t\t\t\t20180618190818_B33","doi-asserted-by":"crossref","first-page":"46","DOI":"10.1105\/tpc.106.047506","article-title":"The indeterminate gametophyte1 gene of maize encodes a LOB domain protein required for embryo Sac and leaf development","volume":"19","author":"Evans","year":"2007","journal-title":"Plant Cell"},{"key":"key\n\t\t\t\t20180618190818_B34","doi-asserted-by":"crossref","first-page":"263","DOI":"10.1104\/pp.103.020016","article-title":"Quantitative trait loci and comparative genomics of cereal cell wall composition","volume":"132","author":"Hazen","year":"2003","journal-title":"Plant Physiol."},{"key":"key\n\t\t\t\t20180618190818_B35","doi-asserted-by":"crossref","first-page":"7980","DOI":"10.1073\/pnas.90.17.7980","article-title":"Comparative linkage maps of the rice and maize genomes","volume":"90","author":"Ahn","year":"1993","journal-title":"Proc. Natl Acad. Sci. USA"},{"key":"key\n\t\t\t\t20180618190818_B36","doi-asserted-by":"crossref","first-page":"259","DOI":"10.1016\/0168-9525(93)90001-X","article-title":"Grasses as a single genetic system: genome composition, collinearity and compatibility","volume":"9","author":"Bennetzen","year":"1993","journal-title":"Trends Genet."},{"key":"key\n\t\t\t\t20180618190818_B37","doi-asserted-by":"crossref","first-page":"1198","DOI":"10.1104\/pp.125.3.1198","article-title":"Evolutionary history of the grasses","volume":"125","author":"Kellogg","year":"2001","journal-title":"Plant Physiol."},{"key":"key\n\t\t\t\t20180618190818_B38","doi-asserted-by":"crossref","first-page":"889","DOI":"10.1093\/bioinformatics\/btg112","article-title":"R\/qtl: QTL mapping in experimental crosses","volume":"19","author":"Broman","year":"2003","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20180618190818_B39","doi-asserted-by":"crossref","first-page":"2633","DOI":"10.1093\/bioinformatics\/btm308","article-title":"TASSEL: software for association mapping of complex traits in diverse samples","volume":"23","author":"Bradbury","year":"2007","journal-title":"Bioinformatics"}],"container-title":["Database"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/database\/article-pdf\/doi\/10.1093\/database\/bap005\/16728416\/bap005.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2021,10,5]],"date-time":"2021-10-05T09:14:32Z","timestamp":1633425272000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/database\/article\/doi\/10.1093\/database\/bap005\/356025"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2009,1,1]]},"references-count":39,"URL":"https:\/\/doi.org\/10.1093\/database\/bap005","relation":{},"ISSN":["1758-0463"],"issn-type":[{"value":"1758-0463","type":"electronic"}],"subject":[],"published-other":{"date-parts":[[2009]]},"published":{"date-parts":[[2009,1,1]]}}}