{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,6]],"date-time":"2024-09-06T10:55:53Z","timestamp":1725620153446},"reference-count":61,"publisher":"Oxford University Press (OUP)","license":[{"start":{"date-parts":[[2016,10,3]],"date-time":"2016-10-03T00:00:00Z","timestamp":1475452800000},"content-version":"vor","delay-in-days":2467,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/2.5"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2010,1,1]]},"DOI":"10.1093\/database\/baq012","type":"journal-article","created":{"date-parts":[[2010,6,28]],"date-time":"2010-06-28T23:24:14Z","timestamp":1277767454000},"source":"Crossref","is-referenced-by-count":9,"title":["Shewanella knowledgebase: integration of the experimental data and computational predictions suggests a biological role for transcription of intergenic regions"],"prefix":"10.1093","volume":"2010","author":[{"given":"Tatiana V.","family":"Karpinets","sequence":"first","affiliation":[{"name":"Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 2Department of Plant Sciences, University of Tennessee, Knoxville, TN, 3Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, 3Computer Science and Mathematics Division, Oak Ridge National Laboratory, Oak Ridge, TN and 4Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory, Woods Hole, MA, USA"},{"name":"Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 2Department of Plant Sciences, University of Tennessee, Knoxville, TN, 3Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, 3Computer Science and Mathematics Division, Oak Ridge National Laboratory, Oak Ridge, TN and 4Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory, Woods Hole, MA, USA"}]},{"given":"Margaret F.","family":"Romine","sequence":"additional","affiliation":[{"name":"Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 2Department of Plant Sciences, University of Tennessee, Knoxville, TN, 3Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, 3Computer Science and Mathematics Division, Oak Ridge National Laboratory, Oak Ridge, TN and 4Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory, Woods Hole, MA, USA"}]},{"given":"Denise D.","family":"Schmoyer","sequence":"additional","affiliation":[{"name":"Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 2Department of Plant Sciences, University of Tennessee, Knoxville, TN, 3Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, 3Computer Science and Mathematics Division, Oak Ridge National Laboratory, Oak Ridge, TN and 4Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory, Woods Hole, MA, USA"}]},{"given":"Guruprasad H.","family":"Kora","sequence":"additional","affiliation":[{"name":"Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 2Department of Plant Sciences, University of Tennessee, Knoxville, TN, 3Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, 3Computer Science and Mathematics Division, Oak Ridge National Laboratory, Oak Ridge, TN and 4Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory, Woods Hole, MA, USA"}]},{"given":"Mustafa H.","family":"Syed","sequence":"additional","affiliation":[{"name":"Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 2Department of Plant Sciences, University of Tennessee, Knoxville, TN, 3Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, 3Computer Science and Mathematics Division, Oak Ridge National Laboratory, Oak Ridge, TN and 4Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory, Woods Hole, MA, USA"}]},{"given":"Michael R.","family":"Leuze","sequence":"additional","affiliation":[{"name":"Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 2Department of Plant Sciences, University of Tennessee, Knoxville, TN, 3Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, 3Computer Science and Mathematics Division, Oak Ridge National Laboratory, Oak Ridge, TN and 4Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory, Woods Hole, MA, USA"}]},{"given":"Margrethe H.","family":"Serres","sequence":"additional","affiliation":[{"name":"Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 2Department of Plant Sciences, University of Tennessee, Knoxville, TN, 3Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, 3Computer Science and Mathematics Division, Oak Ridge National Laboratory, Oak Ridge, TN and 4Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory, Woods Hole, MA, USA"}]},{"given":"Byung H.","family":"Park","sequence":"additional","affiliation":[{"name":"Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 2Department of Plant Sciences, University of Tennessee, Knoxville, TN, 3Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, 3Computer Science and Mathematics Division, Oak Ridge National Laboratory, Oak Ridge, TN and 4Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory, Woods Hole, MA, USA"}]},{"given":"Nagiza F.","family":"Samatova","sequence":"additional","affiliation":[{"name":"Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 2Department of Plant Sciences, University of Tennessee, Knoxville, TN, 3Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, 3Computer Science and Mathematics Division, Oak Ridge National Laboratory, Oak Ridge, TN and 4Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory, Woods Hole, MA, USA"}]},{"given":"Edward C.","family":"Uberbacher","sequence":"additional","affiliation":[{"name":"Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 2Department of Plant Sciences, University of Tennessee, Knoxville, TN, 3Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, 3Computer Science and Mathematics Division, Oak Ridge National Laboratory, Oak Ridge, TN and 4Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory, Woods Hole, MA, USA"}]}],"member":"286","published-online":{"date-parts":[[2010,6,26]]},"reference":[{"key":"key\n\t\t\t\t20180618194032_B1","doi-asserted-by":"crossref","first-page":"592","DOI":"10.1038\/nrmicro1947","article-title":"Towards environmental systems biology of Shewanella","volume":"6","author":"Fredrickson","year":"2008","journal-title":"Nat. Rev. Microbiol."},{"key":"key\n\t\t\t\t20180618194032_B2","doi-asserted-by":"crossref","first-page":"237","DOI":"10.1146\/annurev.micro.61.080706.093257","article-title":"Ecology and biotechnology of the genus Shewanella","volume":"61","author":"Hau","year":"2007","journal-title":"Annu. Rev. Microbiol."},{"key":"key\n\t\t\t\t20180618194032_B3","doi-asserted-by":"crossref","first-page":"2874","DOI":"10.1073\/pnas.0806798106","article-title":"Genomic reconstruction of Shewanella oneidensis MR-1 metabolism reveals a previously uncharacterized machinery for lactate utilization","volume":"106","author":"Pinchuk","year":"2009","journal-title":"Proc. Natl Acad. Sci. USA"},{"key":"key\n\t\t\t\t20180618194032_B4","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1111\/j.1365-2958.2007.05778.x","article-title":"Extracellular respiration","volume":"65","author":"Gralnick","year":"2007","journal-title":"Mol. Microbiol."},{"key":"key\n\t\t\t\t20180618194032_B5","doi-asserted-by":"crossref","first-page":"524","DOI":"10.1002\/bit.22266","article-title":"Simultaneous analysis of physiological and electrical output changes in an operating microbial fuel cell with Shewanella oneidensis","volume":"103","author":"Biffinger","year":"2009","journal-title":"Biotechnol. Bioeng."},{"key":"key\n\t\t\t\t20180618194032_B6","doi-asserted-by":"crossref","first-page":"906","DOI":"10.1016\/j.bios.2008.07.034","article-title":"The influence of acidity on microbial fuel cells containing Shewanella oneidensis","volume":"24","author":"Biffinger","year":"2008","journal-title":"Biosens. Bioelectron."},{"key":"key\n\t\t\t\t20180618194032_B7","doi-asserted-by":"crossref","first-page":"29","DOI":"10.1111\/j.1574-6968.2007.00964.x","article-title":"Growth with high planktonic biomass in Shewanella oneidensis fuel cells","volume":"278","author":"Lanthier","year":"2008","journal-title":"FEMS Microbiol. Lett."},{"key":"key\n\t\t\t\t20180618194032_B8","doi-asserted-by":"crossref","first-page":"59","DOI":"10.1093\/nar\/30.1.59","article-title":"The MetaCyc Database","volume":"30","author":"Karp","year":"2002","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618194032_B9","doi-asserted-by":"crossref","first-page":"D407","DOI":"10.1093\/nar\/gkl865","article-title":"RegTransBase\u2013a database of regulatory sequences and interactions in a wide range of prokaryotic genomes","volume":"35","author":"Kazakov","year":"2007","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618194032_B10","doi-asserted-by":"crossref","first-page":"W690","DOI":"10.1093\/nar\/gki445","article-title":"RibEx: a web server for locating riboswitches and other conserved bacterial regulatory elements","volume":"33","author":"Abreu-Goodger","year":"2005","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618194032_B11","doi-asserted-by":"crossref","first-page":"2271","DOI":"10.1093\/bioinformatics\/btp393","article-title":"IMG ER: a system for microbial genome annotation expert review and curation","volume":"25","author":"Markowitz","year":"2009","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20180618194032_B12","doi-asserted-by":"crossref","first-page":"D483","DOI":"10.1093\/nar\/gkn861","article-title":"Pseudomonas genome database: facilitating user-friendly, comprehensive comparisons of microbial genomes","volume":"37","author":"Winsor","year":"2009","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618194032_B13","doi-asserted-by":"crossref","first-page":"D533","DOI":"10.1093\/nar\/gkl823","article-title":"SYSTOMONAS\u2013an integrated database for systems biology analysis of Pseudomonas","volume":"35","author":"Choi","year":"2007","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618194032_B14","doi-asserted-by":"crossref","first-page":"D358","DOI":"10.1093\/nar\/gki003","article-title":"The Candida Genome Database (CGD), a community resource for Candida albicans gene and protein information","volume":"33","author":"Arnaud","year":"2005","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618194032_B15","doi-asserted-by":"crossref","first-page":"D329","DOI":"10.1093\/nar\/gki028","article-title":"EchoBASE: an integrated post-genomic database for Escherichia coli","volume":"33","author":"Misra","year":"2005","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618194032_B16","doi-asserted-by":"crossref","first-page":"D464","DOI":"10.1093\/nar\/gkn751","article-title":"EcoCyc: a comprehensive view of Escherichia coli biology","volume":"37","author":"Keseler","year":"2009","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618194032_B17","doi-asserted-by":"crossref","first-page":"D308","DOI":"10.1093\/nar\/gkl910","article-title":"The SUPERFAMILY database in 2007: families and functions","volume":"35","author":"Wilson","year":"2007","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618194032_B18","doi-asserted-by":"crossref","first-page":"D343","DOI":"10.1093\/nar\/gkl978","article-title":"MBGD: a platform for microbial comparative genomics based on the automated construction of orthologous groups","volume":"35","author":"Uchiyama","year":"2007","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618194032_B19","doi-asserted-by":"crossref","first-page":"D354","DOI":"10.1093\/nar\/gkl1005","article-title":"PEDANT genome database: 10 years online","volume":"35","author":"Riley","year":"2007","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618194032_B20","doi-asserted-by":"crossref","first-page":"D274","DOI":"10.1093\/nar\/gkl925","article-title":"TransportDB: a comprehensive database resource for cytoplasmic membrane transport systems and outer membrane channels","volume":"35","author":"Ren","year":"2007","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618194032_B21","doi-asserted-by":"crossref","first-page":"160","DOI":"10.1093\/nar\/gkh071","article-title":"MEROPS: the peptidase database","volume":"32","author":"Rawlings","year":"2004","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618194032_B22","doi-asserted-by":"crossref","first-page":"D501","DOI":"10.1093\/nar\/gki025","article-title":"NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins","volume":"33","author":"Pruitt","year":"2005","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618194032_B23","doi-asserted-by":"crossref","first-page":"123","DOI":"10.1093\/nar\/29.1.123","article-title":"The comprehensive microbial resource","volume":"29","author":"Peterson","year":"2001","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618194032_B24","doi-asserted-by":"crossref","first-page":"D132","DOI":"10.1093\/nar\/gkl800","article-title":"Tractor_DB (version 2.0): a database of regulatory interactions in gamma-proteobacterial genomes","volume":"35","author":"Perez","year":"2007","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618194032_B25","doi-asserted-by":"crossref","first-page":"D358","DOI":"10.1093\/nar\/gkj037","article-title":"ODB: a database of operons accumulating known operons across multiple genomes","volume":"34","author":"Okuda","year":"2006","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618194032_B26","doi-asserted-by":"crossref","first-page":"4187","DOI":"10.1093\/bioinformatics\/bti635","article-title":"Virtual Footprint and PRODORIC: an integrative framework for regulon prediction in prokaryotes","volume":"21","author":"Munch","year":"2005","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20180618194032_B27","doi-asserted-by":"crossref","first-page":"W52","DOI":"10.1093\/nar\/gkm360","article-title":"CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats","volume":"35","author":"Grissa","year":"2007","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618194032_B28","doi-asserted-by":"crossref","first-page":"717","DOI":"10.1093\/bioinformatics\/btg077","article-title":"Evaluation of annotation strategies using an entire genome sequence","volume":"19","author":"Iliopoulos","year":"2003","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20180618194032_B29","doi-asserted-by":"crossref","first-page":"97","DOI":"10.1007\/s10142-009-0142-y","article-title":"Conserved synteny at the protein family level reveals genes underlying Shewanella species' cold tolerance and predicts their novel phenotypes","volume":"10","author":"Karpinets","year":"2010","journal-title":"Funct. Integr. Genomic"},{"key":"key\n\t\t\t\t20180618194032_B30","doi-asserted-by":"crossref","first-page":"D866","DOI":"10.1093\/nar\/gkm815","article-title":"Many Microbe Microarrays Database: uniformly normalized Affymetrix compendia with structured experimental metadata","volume":"36","author":"Faith","year":"2008","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618194032_B31","doi-asserted-by":"crossref","first-page":"352","DOI":"10.1016\/j.ceb.2009.04.011","article-title":"Exosome complex and pervasive transcription in eukaryotic genomes","volume":"21","author":"Belostotsky","year":"2009","journal-title":"Curr. Opin. Cell Biol."},{"key":"key\n\t\t\t\t20180618194032_B32","doi-asserted-by":"crossref","first-page":"615","DOI":"10.1101\/gad.458008","article-title":"A cryptic unstable transcript mediates transcriptional trans-silencing of the Ty1 retrotransposon in S. cerevisiae","volume":"22","author":"Berretta","year":"2008","journal-title":"Genes Dev."},{"key":"key\n\t\t\t\t20180618194032_B33","doi-asserted-by":"crossref","first-page":"571","DOI":"10.1038\/nature02538","article-title":"Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene","volume":"429","author":"Martens","year":"2004","journal-title":"Nature"},{"key":"key\n\t\t\t\t20180618194032_B34","doi-asserted-by":"crossref","first-page":"1033","DOI":"10.1038\/nature07728","article-title":"Bidirectional promoters generate pervasive transcription in yeast","volume":"457","author":"Xu","year":"2009","journal-title":"Nature"},{"key":"key\n\t\t\t\t20180618194032_B35","doi-asserted-by":"crossref","first-page":"3203","DOI":"10.1128\/JB.00122-09","article-title":"Structure and complexity of a bacterial transcriptome","volume":"191","author":"Passalacqua","year":"2009","journal-title":"J. Bacteriol."},{"key":"key\n\t\t\t\t20180618194032_B36","doi-asserted-by":"crossref","first-page":"223","DOI":"10.1016\/j.mimet.2005.11.009","article-title":"Confirmation of the expression of a large set of conserved hypothetical proteins in Shewanella oneidensis MR-1","volume":"66","author":"Elias","year":"2006","journal-title":"J. Microbiol. Methods"},{"key":"key\n\t\t\t\t20180618194032_B37","doi-asserted-by":"crossref","first-page":"2099","DOI":"10.1073\/pnas.0409111102","article-title":"Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations","volume":"102","author":"Kolker","year":"2005","journal-title":"Proc. Natl Acad. Sci. USA"},{"key":"key\n\t\t\t\t20180618194032_B38","doi-asserted-by":"crossref","first-page":"239","DOI":"10.1089\/omi.2004.8.239","article-title":"Validation of Shewanella oneidensis MR-1 small proteins by AMT tag-based proteome analysis","volume":"8","author":"Romine","year":"2004","journal-title":"OMICS"},{"key":"key\n\t\t\t\t20180618194032_B39","doi-asserted-by":"crossref","first-page":"1362","DOI":"10.1101\/gr.6427907","article-title":"Whole proteome analysis of post-translational modifications: applications of mass-spectrometry for proteogenomic annotation","volume":"17","author":"Gupta","year":"2007","journal-title":"Genome Res."},{"key":"key\n\t\t\t\t20180618194032_B40","doi-asserted-by":"crossref","first-page":"3257","DOI":"10.1128\/AEM.02720-07","article-title":"Identification of mobile elements and pseudogenes in the Shewanella oneidensis MR-1 genome","volume":"74","author":"Romine","year":"2008","journal-title":"Appl. Environ. Microbiol."},{"key":"key\n\t\t\t\t20180618194032_B41","doi-asserted-by":"crossref","first-page":"D121","DOI":"10.1093\/nar\/gki081","article-title":"Rfam: annotating non-coding RNAs in complete genomes","volume":"33","author":"Griffiths-Jones","year":"2005","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618194032_B42","doi-asserted-by":"crossref","first-page":"6083","DOI":"10.1093\/nar\/gki892","article-title":"Expansion of the BioCyc collection of pathway\/genome databases to 160 genomes","volume":"33","author":"Karp","year":"2005","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618194032_B43","doi-asserted-by":"crossref","first-page":"5376","DOI":"10.1093\/nar\/gkn515","article-title":"The cis-regulatory map of Shewanella genomes","volume":"36","author":"Liu","year":"2008","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618194032_B44","doi-asserted-by":"crossref","first-page":"e1000338","DOI":"10.1371\/journal.pcbi.1000338","article-title":"Discovering cis-regulatory RNAs in Shewanella genomes by Support Vector Machines","volume":"5","author":"Xu","year":"2009","journal-title":"PLoS Comput. Biol."},{"key":"key\n\t\t\t\t20180618194032_B45","doi-asserted-by":"crossref","first-page":"42","DOI":"10.1186\/1471-2164-9-42","article-title":"Probing regulon of ArcA in Shewanella oneidensis MR-1 by integrated genomic analyses","volume":"9","author":"Gao","year":"2008","journal-title":"BMC Genomics"},{"key":"key\n\t\t\t\t20180618194032_B46","doi-asserted-by":"crossref","first-page":"395","DOI":"10.1186\/1471-2164-9-395","article-title":"Transcriptome analysis reveals response regulator SO2426-mediated gene expression in Shewanella oneidensis MR-1 under chromate challenge","volume":"9","author":"Chourey","year":"2008","journal-title":"BMC Genomics"},{"key":"key\n\t\t\t\t20180618194032_B47","doi-asserted-by":"crossref","first-page":"1599","DOI":"10.1101\/gr.403602","article-title":"The generic genome browser: a building block for a model organism system database","volume":"12","author":"Stein","year":"2002","journal-title":"Genome Res."},{"key":"key\n\t\t\t\t20180618194032_B48","doi-asserted-by":"crossref","first-page":"169","DOI":"10.6026\/97320630004169","article-title":"Shewregdb: database and visualization environment for experimental and predicted regulatory information in Shewanella oneidensis mr-1","volume":"4","author":"Syed","year":"2009","journal-title":"Bioinformation"},{"key":"key\n\t\t\t\t20180618194032_B49","doi-asserted-by":"crossref","first-page":"D623","DOI":"10.1093\/nar\/gkm900","article-title":"The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway\/genome databases","volume":"36","author":"Caspi","year":"2008","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618194032_B50","doi-asserted-by":"crossref","first-page":"40","DOI":"10.1093\/bib\/bbp043","article-title":"Pathway Tools version 13.0: integrated software for pathway\/genome informatics and systems biology","volume":"11","author":"Karp","year":"2010","journal-title":"Brief Bioinform."},{"key":"key\n\t\t\t\t20180618194032_B51","first-page":"287","article-title":"Identification of diverse carbon utilization pathways in Shewanella oneidensis MR-1 via expression profiling","volume":"18","author":"Driscoll","year":"2007","journal-title":"Genome Inform."},{"key":"key\n\t\t\t\t20180618194032_B52","doi-asserted-by":"crossref","first-page":"4298","DOI":"10.1128\/JB.01829-08","article-title":"Involvement of a membrane-bound class III adenylate cyclase in regulation of anaerobic respiration in Shewanella oneidensis MR-1","volume":"191","author":"Charania","year":"2009","journal-title":"J. Bacteriol."},{"key":"key\n\t\t\t\t20180618194032_B53","doi-asserted-by":"crossref","first-page":"5116","DOI":"10.1073\/pnas.091062498","article-title":"Significance analysis of microarrays applied to the ionizing radiation response","volume":"98","author":"Tusher","year":"2001","journal-title":"Proc. Natl Acad. Sci. USA"},{"key":"key\n\t\t\t\t20180618194032_B54","doi-asserted-by":"crossref","first-page":"975","DOI":"10.1139\/w05-101","article-title":"Participation of the Entner-Doudoroff pathway in Escherichia coli strains with an inactive phosphotransferase system (PTS- Glc+) in gluconate and glucose batch cultures","volume":"51","author":"Ponce","year":"2005","journal-title":"Can. J. Microbiol."},{"key":"key\n\t\t\t\t20180618194032_B55","doi-asserted-by":"crossref","first-page":"7053","DOI":"10.1128\/JB.185.24.7053-7067.2003","article-title":"Responses of the central metabolism in Escherichia coli to phosphoglucose isomerase and glucose-6-phosphate dehydrogenase knockouts","volume":"185","author":"Hua","year":"2003","journal-title":"J. Bacteriol."},{"key":"key\n\t\t\t\t20180618194032_B56","doi-asserted-by":"crossref","first-page":"91","DOI":"10.1007\/s00253-003-1458-5","article-title":"Global metabolic response of Escherichia coli to gnd or zwf gene-knockout, based on 13C-labeling experiments and the measurement of enzyme activities","volume":"64","author":"Zhao","year":"2004","journal-title":"Appl. Microbiol. Biotechnol."},{"key":"key\n\t\t\t\t20180618194032_B57","doi-asserted-by":"crossref","first-page":"1792","DOI":"10.1093\/nar\/gkh340","article-title":"MUSCLE: multiple sequence alignment with high accuracy and high throughput","volume":"32","author":"Edgar","year":"2004","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618194032_B58","doi-asserted-by":"crossref","first-page":"1189","DOI":"10.1093\/bioinformatics\/btp033","article-title":"Jalview Version 2\u2013a multiple sequence alignment editor and analysis workbench","volume":"25","author":"Waterhouse","year":"2009","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20180618194032_B59","volume-title":"Pseudomonas","author":"Montie","year":"1999"},{"key":"key\n\t\t\t\t20180618194032_B60","doi-asserted-by":"crossref","first-page":"3934","DOI":"10.1128\/JB.182.14.3934-3941.2000","article-title":"The Pseudomonas aeruginosa devB\/SOL homolog, pgl, is a member of the hex regulon and encodes 6-phosphogluconolactonase","volume":"182","author":"Hager","year":"2000","journal-title":"J. Bacteriol."},{"key":"key\n\t\t\t\t20180618194032_B61","doi-asserted-by":"crossref","first-page":"21360","DOI":"10.1074\/jbc.M109.014555","article-title":"Regulation of glucose metabolism in Pseudomonas: the phosphorylative branch and Entner-Doudoroff enzymes are regulated by a repressor containing a sugar isomerase domain","volume":"284","author":"Daddaoua","year":"2009","journal-title":"J. Biol. Chem."}],"container-title":["Database"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/database\/article-pdf\/doi\/10.1093\/database\/baq012\/16728402\/baq012.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,5,30]],"date-time":"2019-05-30T10:09:49Z","timestamp":1559210989000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/database\/article\/doi\/10.1093\/database\/baq012\/405030"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2010,1,1]]},"references-count":61,"URL":"https:\/\/doi.org\/10.1093\/database\/baq012","relation":{},"ISSN":["1758-0463"],"issn-type":[{"value":"1758-0463","type":"electronic"}],"subject":[],"published-other":{"date-parts":[[2010]]},"published":{"date-parts":[[2010,1,1]]}}}