{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,5]],"date-time":"2025-10-05T19:52:04Z","timestamp":1759693924394},"reference-count":37,"publisher":"Oxford University Press (OUP)","license":[{"start":{"date-parts":[[2016,10,3]],"date-time":"2016-10-03T00:00:00Z","timestamp":1475452800000},"content-version":"vor","delay-in-days":2102,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/2.5"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2011,1,1]]},"DOI":"10.1093\/database\/bar036","type":"journal-article","created":{"date-parts":[[2011,8,28]],"date-time":"2011-08-28T00:46:35Z","timestamp":1314492395000},"source":"Crossref","is-referenced-by-count":11,"title":["ppiTrim: constructing non-redundant and up-to-date interactomes"],"prefix":"10.1093","volume":"2011","author":[{"given":"Aleksandar","family":"Stojmirovi\u0107","sequence":"first","affiliation":[{"name":"National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Yi-Kuo","family":"Yu","sequence":"additional","affiliation":[{"name":"National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2011,8,27]]},"reference":[{"key":"key\n\t\t\t\t20180618194132_bar036-B1","first-page":"e1000807","article-title":"Protein\u2013protein interactions essentials: key concepts to building and analyzing interactome networks","volume":"60","author":"De Las Rivas","year":"2010","journal-title":"PLoS Comput. Biol."},{"issue":"Database issue","key":"key\n\t\t\t\t20180618194132_bar036-B2","first-page":"D698","article-title":"The BioGRID interaction database: 2011 update","volume":"39","author":"Stark","year":"2011","journal-title":"Nucleic Acids. Res."},{"issue":"Database issue","key":"key\n\t\t\t\t20180618194132_bar036-B3","first-page":"D525","article-title":"The IntAct molecular interaction database in 2010","volume":"38","author":"Aranda","year":"2010","journal-title":"Nucleic Acids. Res."},{"issue":"Database issue","key":"key\n\t\t\t\t20180618194132_bar036-B4","first-page":"D532","article-title":"MINT, the molecular interaction database: 2009 update","volume":"38","author":"Ceol","year":"2010","journal-title":"Nucleic Acids. Res."},{"issue":"Database issue","key":"key\n\t\t\t\t20180618194132_bar036-B5","first-page":"D449","article-title":"The database of interacting proteins: 2004 update","volume":"32","author":"Salwinski","year":"2004","journal-title":"Nucleic Acids. Res."},{"issue":"Database issue","key":"key\n\t\t\t\t20180618194132_bar036-B6","first-page":"D418","article-title":"The Biomolecular Interaction Network Database and related tools 2005 update","volume":"33","author":"Alfarano","year":"2005","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618194132_bar036-B7","article-title":"The Biomolecular Interaction Network Database in PSI-MI 2.5","author":"Isserlin","year":"2011","journal-title":"Database"},{"issue":"Database issue","key":"key\n\t\t\t\t20180618194132_bar036-B8","first-page":"D767","article-title":"Human Protein Reference Database \u2013 2009 update","volume":"37","author":"Keshava Prasad","year":"2009","journal-title":"Nucleic Acids. Res."},{"key":"key\n\t\t\t\t20180618194132_bar036-B9","first-page":"39","article-title":"Literature-curated protein interaction data sets","volume":"6","author":"Cusick","year":"2009","journal-title":"Nat. Methods"},{"key":"key\n\t\t\t\t20180618194132_bar036-B10","first-page":"28","article-title":"Submit your interaction data the IMEx way: a step by step guide to trouble-free deposition","volume":"7","author":"Orchard","year":"2007","journal-title":"Proteomics"},{"key":"key\n\t\t\t\t20180618194132_bar036-B11","first-page":"44","article-title":"Broadening the horizon\u2013level 2.5 of the HUPO-PSI format for molecular interactions","volume":"5","author":"Kerrien","year":"2007","journal-title":"BMC Biol."},{"key":"key\n\t\t\t\t20180618194132_bar036-B12","first-page":"S5","article-title":"Inferring cellular networks\u2013a review","volume":"8","author":"Markowetz","year":"2007","journal-title":"BMC Bioinformatics"},{"key":"key\n\t\t\t\t20180618194132_bar036-B13","first-page":"8.2.1","article-title":"Prediction of protein\u2013protein interaction networks","volume":"22","author":"Gomez","year":"2008","journal-title":"Current Protocols in Bioinformatics"},{"key":"key\n\t\t\t\t20180618194132_bar036-B14","first-page":"43","article-title":"Inferring protein\u2013protein interactions from multiple protein domain combinations","volume":"541","author":"Kanaan","year":"2009","journal-title":"Methods Mol. Biol."},{"key":"key\n\t\t\t\t20180618194132_bar036-B15","first-page":"55","article-title":"Predicting protein\u2013protein interactions in the context of protein evolution","volume":"6","author":"Lewis","year":"2010","journal-title":"Mol. Biosyst."},{"key":"key\n\t\t\t\t20180618194132_bar036-B16","first-page":"324","article-title":"Interaction networks: from protein functions to drug discovery. A review","volume":"57","author":"Chautard","year":"2009","journal-title":"Pathol. Biol."},{"key":"key\n\t\t\t\t20180618194132_bar036-B17","first-page":"15","article-title":"Toward the dynamic interactome: it's about time","volume":"11","author":"Przytycka","year":"2010","journal-title":"Brief. Bioinform."},{"issue":"Database issue","key":"key\n\t\t\t\t20180618194132_bar036-B18","first-page":"D497","article-title":"CORUM: the comprehensive resource of mammalian protein complexes\u20132009","volume":"38","author":"Ruepp","year":"2010","journal-title":"Nucleic Acids Res."},{"issue":"Database issue","key":"key\n\t\t\t\t20180618194132_bar036-B19","first-page":"D436","article-title":"MPact: the MIPS protein interaction resource on yeast","volume":"34","author":"Gldener","year":"2006","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618194132_bar036-B20","first-page":"832","article-title":"The MIPS mammalian protein-protein interaction database","volume":"21","author":"Pagel","year":"2005","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20180618194132_bar036-B21","first-page":"2076","article-title":"Online predicted human interaction database","volume":"21","author":"Brown","year":"2005","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20180618194132_bar036-B22","first-page":"405","article-title":"iRefIndex: a consolidated protein interaction database with provenance","volume":"9","author":"Razick","year":"2008","journal-title":"BMC Bioinformatics"},{"key":"key\n\t\t\t\t20180618194132_bar036-B23","article-title":"iRefWeb: interactive analysis of consolidated protein interaction data and their supporting evidence","author":"Turner","year":"2010","journal-title":"Database"},{"key":"key\n\t\t\t\t20180618194132_bar036-B24","article-title":"Literature curation of protein interactions: measuring agreement across major public databases","author":"Turinsky","year":"2010","journal-title":"Database"},{"key":"key\n\t\t\t\t20180618194132_bar036-B25","first-page":"2447","article-title":"ITM Probe: analyzing information flow in protein networks","volume":"25","author":"Stojmirovi\u0107","year":"2009","journal-title":"Bioinformatics"},{"issue":"Database issue","key":"key\n\t\t\t\t20180618194132_bar036-B26","first-page":"D52","article-title":"Entrez Gene: gene-centered information at NCBI","volume":"39","author":"Maglott","year":"2011","journal-title":"Nucleic Acids Res"},{"issue":"Database issue","key":"key\n\t\t\t\t20180618194132_bar036-B27","first-page":"D142","article-title":"The Universal Protein Resource (UniProt) in 2010","volume":"38","author":"UniProt Consortium","year":"2010","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618194132_bar036-B28","first-page":"1251","article-title":"The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration","volume":"25","author":"Smith","year":"2007","journal-title":"Nat. Biotechnol."},{"key":"key\n\t\t\t\t20180618194132_bar036-B29","first-page":"808","article-title":"Global mapping of the yeast genetic interaction network","volume":"303","author":"Tong","year":"2004","journal-title":"Science"},{"key":"key\n\t\t\t\t20180618194132_bar036-B30","first-page":"439","article-title":"Toward a comprehensive atlas of the physical interactome of saccharomyces cerevisiae","volume":"6","author":"Collins","year":"2007","journal-title":"Mol. Cell. Proteomics."},{"key":"key\n\t\t\t\t20180618194132_bar036-B31","first-page":"631","article-title":"Proteome survey reveals modularity of the yeast cell machinery","volume":"440","author":"Gavin","year":"2006","journal-title":"Nature"},{"key":"key\n\t\t\t\t20180618194132_bar036-B32","first-page":"637","article-title":"Global landscape of protein complexes in the yeast saccharomyces cerevisiae","volume":"440","author":"Krogan","year":"2006","journal-title":"Nature"},{"key":"key\n\t\t\t\t20180618194132_bar036-B33","first-page":"25","article-title":"Gene ontology: tool for the unification of biology. The Gene Ontology Consortium","volume":"25","author":"Ashburner","year":"2000","journal-title":"Nat. Genet."},{"key":"key\n\t\t\t\t20180618194132_bar036-B34","first-page":"505","article-title":"RAId_DbS: mass-spectrometry based peptide identification web server with knowledge integration","volume":"9","author":"Alves","year":"2008","journal-title":"BMC Genomics"},{"key":"key\n\t\t\t\t20180618194132_bar036-B35","first-page":"4102","article-title":"Defining the sumo-modified proteome by multiple approaches in Saccharomyces cerevisiae","volume":"280","author":"Hannich","year":"2005","journal-title":"J. Biol. Chem."},{"issue":"Database issue","key":"key\n\t\t\t\t20180618194132_bar036-B36","first-page":"D691","article-title":"Reactome: a database of reactions, pathways and biological processes","volume":"39","author":"Croft","year":"2011","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618194132_bar036-B37","first-page":"6327","article-title":"Multiple transcriptional activation complexes tether the yeast activator Met4 to DNA","volume":"17","author":"Blaiseau","year":"1998","journal-title":"EMBO J."}],"container-title":["Database"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/database\/article-pdf\/doi\/10.1093\/database\/bar036\/14094855\/bar036.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2018,6,18]],"date-time":"2018-06-18T23:43:55Z","timestamp":1529365435000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/database\/article\/doi\/10.1093\/database\/bar036\/466398"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2011,1,1]]},"references-count":37,"URL":"https:\/\/doi.org\/10.1093\/database\/bar036","relation":{},"ISSN":["1758-0463"],"issn-type":[{"value":"1758-0463","type":"electronic"}],"subject":[],"published-other":{"date-parts":[[2011]]},"published":{"date-parts":[[2011,1,1]]}}}