{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,8,4]],"date-time":"2024-08-04T15:52:29Z","timestamp":1722786749508},"reference-count":23,"publisher":"Oxford University Press (OUP)","license":[{"start":{"date-parts":[[2016,10,3]],"date-time":"2016-10-03T00:00:00Z","timestamp":1475452800000},"content-version":"vor","delay-in-days":1371,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/3.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2013,1,1]]},"DOI":"10.1093\/database\/bat010","type":"journal-article","created":{"date-parts":[[2013,3,14]],"date-time":"2013-03-14T05:23:41Z","timestamp":1363238621000},"source":"Crossref","is-referenced-by-count":13,"title":["Uncovering hidden duplicated content in public transcriptomics data"],"prefix":"10.1093","volume":"2013","author":[{"given":"Marta","family":"Rosikiewicz","sequence":"first","affiliation":[{"name":"Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland and 2Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland"},{"name":"Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland and 2Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Aur\u00e9lie","family":"Comte","sequence":"additional","affiliation":[{"name":"Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland and 2Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland"},{"name":"Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland and 2Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Anne","family":"Niknejad","sequence":"additional","affiliation":[{"name":"Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland and 2Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland"},{"name":"Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland and 2Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Marc","family":"Robinson-Rechavi","sequence":"additional","affiliation":[{"name":"Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland and 2Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland"},{"name":"Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland and 2Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Frederic B.","family":"Bastian","sequence":"additional","affiliation":[{"name":"Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland and 2Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland"},{"name":"Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland and 2Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2013,3,13]]},"reference":[{"key":"key\n\t\t\t\t20180618201753_bat010-B1","doi-asserted-by":"crossref","first-page":"124","DOI":"10.1007\/978-3-540-69828-9_12","article-title":"Bgee: integrating and comparing heterogeneous transcriptome data among species","volume-title":"Data Integration in the Life Sciences","author":"Bastian","year":"2008"},{"key":"key\n\t\t\t\t20180618201753_bat010-B2","doi-asserted-by":"crossref","first-page":"D1005","DOI":"10.1093\/nar\/gkq1184","article-title":"NCBI GEO: archive for functional genomics data sets\u201a 10 years on","volume":"39","author":"Barrett","year":"2011","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618201753_bat010-B3","doi-asserted-by":"crossref","first-page":"D1002","DOI":"10.1093\/nar\/gkq1040","article-title":"ArrayExpress update \u2013 an archive of microarray and high-throughput sequencing-based functional genomics experiments","volume":"39","author":"Parkinson","year":"2011","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618201753_bat010-B4","doi-asserted-by":"crossref","first-page":"D54","DOI":"10.1093\/nar\/gkr854","article-title":"The Sequence Read Archive: explosive growth of sequencing data","volume":"40","author":"Kodama","year":"2012","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618201753_bat010-B5","doi-asserted-by":"crossref","first-page":"1593","DOI":"10.1093\/bioinformatics\/18.12.1593","article-title":"Analysis of high density expression microarrays with signed-rank call algorithms","volume":"18","author":"Liu","year":"2002","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20180618201753_bat010-B6","author":"Federal Information Processing Standards","year":"2002"},{"key":"key\n\t\t\t\t20180618201753_bat010-B7","volume-title":"R: A Language and Environment for Statistical Computing","author":"R Core Team (2012)"},{"key":"key\n\t\t\t\t20180618201753_bat010-B8","volume-title":"Heart Failure in TNF-Alpha Transgenic Mice","author":"Tang","year":"2003"},{"key":"key\n\t\t\t\t20180618201753_bat010-B9","doi-asserted-by":"crossref","first-page":"127","DOI":"10.1152\/physiolgenomics.00025.2008","article-title":"Validating the genomic signature of pediatric septic shock","volume":"34","author":"Cvijanovich","year":"2008","journal-title":"Physiol. Genomics"},{"key":"key\n\t\t\t\t20180618201753_bat010-B10","doi-asserted-by":"crossref","first-page":"1146","DOI":"10.2119\/molmed.2011.00169","article-title":"The influence of developmental age on the early transcriptomic response of children with septic shock","volume":"17","author":"Wynn","year":"2011","journal-title":"Mol. Med."},{"key":"key\n\t\t\t\t20180618201753_bat010-B11","doi-asserted-by":"crossref","first-page":"495","DOI":"10.2119\/2007-00065.Shanley","article-title":"Genome-level longitudinal expression of signaling pathways and gene networks in pediatric septic shock","volume":"13","author":"Shanley","year":"2007","journal-title":"Mol. Med."},{"key":"key\n\t\t\t\t20180618201753_bat010-B12","doi-asserted-by":"crossref","first-page":"1558","DOI":"10.1097\/CCM.0b013e31819fcc08","article-title":"Genomic expression profiling across the pediatric systemic inflammatory response syndrome, sepsis, and septic shock spectrum","volume":"37","author":"Wong","year":"2009","journal-title":"Crit. Care Med."},{"key":"key\n\t\t\t\t20180618201753_bat010-B13","doi-asserted-by":"crossref","first-page":"34","DOI":"10.1186\/1741-7015-7-34","article-title":"Identification of pediatric septic shock subclasses based on genome-wide expression profiling","volume":"7","author":"Wong","year":"2009","journal-title":"BMC Med."},{"key":"key\n\t\t\t\t20180618201753_bat010-B14","doi-asserted-by":"crossref","first-page":"e1385","DOI":"10.1371\/journal.pone.0001385","article-title":"Sex-related differences in gene expression in human skeletal muscle","volume":"3","author":"Welle","year":"2008","journal-title":"PLoS One"},{"key":"key\n\t\t\t\t20180618201753_bat010-B15","doi-asserted-by":"crossref","first-page":"569","DOI":"10.1212\/01.wnl.0000251269.31442.d9","article-title":"Expression profile of FSHD supports a link between retinal vasculopathy and muscular dystrophy","volume":"68","author":"Osborne","year":"2007","journal-title":"Neurology"},{"key":"key\n\t\t\t\t20180618201753_bat010-B16","doi-asserted-by":"crossref","first-page":"e3621","DOI":"10.1371\/journal.pone.0003621","article-title":"Identification of Spt5 target genes in zebrafish development reveals its dual activity in vivo","volume":"3","author":"Krishnan","year":"2008","journal-title":"PLoS One"},{"key":"key\n\t\t\t\t20180618201753_bat010-B17","volume-title":"Foggy Mutant: Brain","author":"Guo","year":"2008"},{"key":"key\n\t\t\t\t20180618201753_bat010-B18","doi-asserted-by":"crossref","first-page":"1282","DOI":"10.1093\/bioinformatics\/btm098","article-title":"UniRef: comprehensive and non-redundant UniProt reference clusters","volume":"23","author":"Suzek","year":"2007","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t20180618201753_bat010-B19","doi-asserted-by":"crossref","first-page":"656","DOI":"10.1038\/nbt0604-656b","article-title":"Preprocessing of oligonucleotide array data","volume":"22","author":"Wu","year":"2004","journal-title":"Nat. Biotech."},{"key":"key\n\t\t\t\t20180618201753_bat010-B20","doi-asserted-by":"crossref","first-page":"249","DOI":"10.1093\/biostatistics\/4.2.249","article-title":"Exploration, normalization, and summaries of high density oligonucleotide array probe level data","volume":"4","author":"Irizarry","year":"2003","journal-title":"Biostatistics"},{"key":"key\n\t\t\t\t20180618201753_bat010-B21","volume-title":"Overexpression of dn-p21ras as a Model System for Severe Dilated Cardiomyopathy","author":"Schinke","year":"2003"},{"key":"key\n\t\t\t\t20180618201753_bat010-B22","volume-title":"FVB Benchmark Set for Cardiac Development, Maturation, and Aging","author":"Schinke","year":"2002"},{"key":"key\n\t\t\t\t20180618201753_bat010-B23","doi-asserted-by":"crossref","first-page":"343","DOI":"10.1038\/nature10532","article-title":"The evolution of gene expression levels in mammalian organs","volume":"478","author":"Brawand","year":"2011","journal-title":"Nature"}],"container-title":["Database"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/database\/article-pdf\/doi\/10.1093\/database\/bat010\/16732519\/bat010.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,7,10]],"date-time":"2019-07-10T23:57:29Z","timestamp":1562803049000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/database\/article\/doi\/10.1093\/database\/bat010\/330607"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2013,1,1]]},"references-count":23,"URL":"https:\/\/doi.org\/10.1093\/database\/bat010","relation":{},"ISSN":["1758-0463"],"issn-type":[{"value":"1758-0463","type":"electronic"}],"subject":[],"published-other":{"date-parts":[[2013]]},"published":{"date-parts":[[2013,1,1]]}}}