{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,14]],"date-time":"2026-07-14T01:39:04Z","timestamp":1783993144173,"version":"3.55.0"},"reference-count":38,"publisher":"Oxford University Press (OUP)","license":[{"start":{"date-parts":[[2016,12,5]],"date-time":"2016-12-05T00:00:00Z","timestamp":1480896000000},"content-version":"vor","delay-in-days":1069,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2014,1,1]]},"DOI":"10.1093\/database\/bau079","type":"journal-article","created":{"date-parts":[[2014,8,15]],"date-time":"2014-08-15T06:09:11Z","timestamp":1408082951000},"source":"Crossref","is-referenced-by-count":28,"title":["PlantCAZyme: a database for plant carbohydrate-active enzymes"],"prefix":"10.1093","volume":"2014","author":[{"given":"Alexander","family":"Ekstrom","sequence":"first","affiliation":[{"name":"Department of Computer Science and 2Department of Biological Sciences, Northern Illinois University, DeKalb, IL 60115, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Rahil","family":"Taujale","sequence":"additional","affiliation":[{"name":"Department of Computer Science and 2Department of Biological Sciences, Northern Illinois University, DeKalb, IL 60115, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Nathan","family":"McGinn","sequence":"additional","affiliation":[{"name":"Department of Computer Science and 2Department of Biological Sciences, Northern Illinois University, DeKalb, IL 60115, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yanbin","family":"Yin","sequence":"additional","affiliation":[{"name":"Department of Computer Science and 2Department of Biological Sciences, Northern Illinois University, DeKalb, IL 60115, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2014,8,14]]},"reference":[{"key":"key\n\t\t\t\t20180618193857_bau079-B1","first-page":"841","article-title":"Genomics of cellulosic biofuels","volume":"454","author":"Rubin","year":"2008","journal-title":"Nature"},{"key":"key\n\t\t\t\t20180618193857_bau079-B2","first-page":"804","article-title":"Biomass recalcitrance: engineering plants and enzymes for biofuels production","volume":"315","author":"Himmel","year":"2007","journal-title":"Science"},{"key":"key\n\t\t\t\t20180618193857_bau079-B3","first-page":"95","volume-title":"Bioenergy Research: Advances and Applications","author":"Yin","year":"2014"},{"key":"key\n\t\t\t\t20180618193857_bau079-B4","first-page":"D233D238.","article-title":"The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics","volume":"37","author":"Cantarel","year":"2009","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618193857_bau079-B5","first-page":"563565.","article-title":"Why are there so many carbohydrate-active enzyme-related genes in plants?","volume":"8","author":"Coutinho","year":"2003","journal-title":"Trend Plant Sci."},{"key":"key\n\t\t\t\t20180618193857_bau079-B6","first-page":"D490","article-title":"The carbohydrate-active enzymes database (CAZy) in 2013","volume":"42","author":"Lombard","year":"2014","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618193857_bau079-B7","first-page":"93","volume-title":"Annual Plant Reviews","author":"Coutinho","year":"2010"},{"key":"key\n\t\t\t\t20180618193857_bau079-B8","first-page":"W445","article-title":"dbCAN: a web resource for automated carbohydrate-active enzyme annotation","volume":"40","author":"Yin","year":"2012","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618193857_bau079-B9","first-page":"209","article-title":"pDAWG: An integrated database for plant cell wall genes","volume":"2","author":"Mao","year":"2009","journal-title":"Bioenerg Res."},{"key":"key\n\t\t\t\t20180618193857_bau079-B10","first-page":"858","article-title":"Construction of a rice glycosyltransferase phylogenomic database and identification of rice-diverged glycosyltransferases","volume":"1","author":"Cao","year":"2008","journal-title":"Mol. Plant"},{"key":"key\n\t\t\t\t20180618193857_bau079-B11","first-page":"747","article-title":"Genomics of plant cell wall biogenesis","volume":"221","author":"Yong","year":"2005","journal-title":"Planta"},{"key":"key\n\t\t\t\t20180618193857_bau079-B12","first-page":"3003","article-title":"The cell wall navigator database. A systems-based approach to organism-unrestricted mining of protein families involved in cell wall metabolism","volume":"136","author":"Girke","year":"2004","journal-title":"Plant Physiol."},{"key":"key\n\t\t\t\t20180618193857_bau079-B13","first-page":"D1178","article-title":"Phytozome: a comparative platform for green plant genomics","volume":"40","author":"Goodstein","year":"2012","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618193857_bau079-B14","first-page":"579","article-title":"The Norway spruce genome sequence and conifer genome evolution","volume":"497","author":"Nystedt","year":"2013","journal-title":"Nature"},{"key":"key\n\t\t\t\t20180618193857_bau079-B15","first-page":"e1002195.","article-title":"Accelerated profile HMM searches","volume":"7","author":"Eddy","year":"2011","journal-title":"PLoS Computat. Biol."},{"key":"key\n\t\t\t\t20180618193857_bau079-B16","first-page":"55","article-title":"A census of carbohydrate-active enzymes in the genome of Arabidopsis thaliana","volume":"47","author":"Henrissat","year":"2001","journal-title":"Plant Mol. Biol."},{"key":"key\n\t\t\t\t20180618193857_bau079-B17","first-page":"946","article-title":"Poplar carbohydrate-active enzymes. Gene identification and expression analyses","volume":"140","author":"Geisler-Lee","year":"2006","journal-title":"Plant Physiol."},{"key":"key\n\t\t\t\t20180618193857_bau079-B18","first-page":"1574","article-title":"CAZymes Analysis Toolkit (CAT): Web service for searching and analyzing carbohydrate-active enzymes in a newly sequenced organism using CAZy database","volume":"20","author":"Park","year":"2010","journal-title":"Glycobiology"},{"key":"key\n\t\t\t\t20180618193857_bau079-B19","first-page":"D222","article-title":"Pfam: the protein families database","volume":"42","author":"Finn","year":"2014","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618193857_bau079-B20","first-page":"41","article-title":"The COG database: an updated version includes eukaryotes","volume":"4","author":"Tatusov","year":"2003","journal-title":"BMC Bioinformatics"},{"key":"key\n\t\t\t\t20180618193857_bau079-B21","first-page":"D109","article-title":"KEGG for integration and interpretation of large-scale molecular data sets","volume":"40","author":"Kanehisa","year":"2012","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618193857_bau079-B22","first-page":"268","article-title":"SUPERFAMILY: HMMs representing all proteins of known structure. SCOP sequence searches, alignments and genome assignments","volume":"30","author":"Gough","year":"2002","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618193857_bau079-B23","first-page":"D377","article-title":"PANTHER in 2013: modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees","volume":"41","author":"Mi","year":"2013","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618193857_bau079-B24","first-page":"25","article-title":"Gene ontology: tool for the unification of biology","volume":"25","author":"Ashburner","year":"2000","journal-title":"Nat Genet"},{"key":"key\n\t\t\t\t20180618193857_bau079-B25","first-page":"D211","article-title":"InterPro: the integrative protein signature database","volume":"37","author":"Hunter","year":"2009","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618193857_bau079-B26","first-page":"D225","article-title":"CDD: a conserved domain database for the functional annotation of proteins","volume":"39","author":"Marchler-Bauer","year":"2011","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618193857_bau079-B27","first-page":"103","article-title":"Gramene: a resource for comparative grass genomics","volume":"30","author":"Ware","year":"2002","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618193857_bau079-B28","first-page":"590","article-title":"Dissecting plant genomes with the PLAZA comparative genomics platform","volume":"158","author":"Van Bel","year":"2012","journal-title":"Plant Physiol."},{"key":"key\n\t\t\t\t20180618193857_bau079-B29","first-page":"304","article-title":"The ENZYME database in 2000","volume":"28","author":"Bairoch","year":"2000","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618193857_bau079-B30","first-page":"6633","article-title":"Enzyme-specific profiles for genome annotation: PRIAM","volume":"31","author":"Claudel-Renard","year":"2003","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618193857_bau079-B31","first-page":"449","article-title":"Genome-wide enzyme annotation with precision control: Catalytic families [CatFam] databases","volume":"74","author":"Yu","year":"2009","journal-title":"Proteins"},{"key":"key\n\t\t\t\t20180618193857_bau079-B32","first-page":"6226","article-title":"EFICAz: a comprehensive approach for accurate genome-scale enzyme function inference","volume":"32","author":"Tian","year":"2004","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618193857_bau079-B33","first-page":"453","article-title":"AraCyc: a biochemical pathway database for Arabidopsis","volume":"132","author":"Mueller","year":"2003","journal-title":"Plant Physiol."},{"key":"key\n\t\t\t\t20180618193857_bau079-B34","first-page":"D966","article-title":"PlantTFDB: a comprehensive plant transcription factor database","volume":"36","author":"Guo","year":"2008","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618193857_bau079-B35","first-page":"D441","article-title":"PeroxiBase: a database for large-scale evolutionary analysis of peroxidases","volume":"41","author":"Fawal","year":"2013","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618193857_bau079-B36","first-page":"D181","article-title":"TCDB: the transporter classification database for membrane transport protein analyses and information","volume":"34","author":"Saier","year":"2006","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618193857_bau079-B37","first-page":"D343","article-title":"MEROPS: the database of proteolytic enzymes, their substrates and inhibitors","volume":"40","author":"Rawlings","year":"2012","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618193857_bau079-B38","first-page":"473","article-title":"Cellulases: ambiguous nonhomologous enzymes in a genomic perspective","volume":"29","author":"Sukharnikov","year":"2011","journal-title":"Trends Biotechnol."}],"container-title":["Database"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/database\/article-pdf\/doi\/10.1093\/database\/bau079\/17473137\/bau079.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2018,6,18]],"date-time":"2018-06-18T19:41:12Z","timestamp":1529350872000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/database\/article\/doi\/10.1093\/database\/bau079\/2634862"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2014,1,1]]},"references-count":38,"URL":"https:\/\/doi.org\/10.1093\/database\/bau079","relation":{},"ISSN":["1758-0463"],"issn-type":[{"value":"1758-0463","type":"electronic"}],"subject":[],"published-other":{"date-parts":[[2014]]},"published":{"date-parts":[[2014,1,1]]}}}