{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,18]],"date-time":"2026-01-18T12:48:07Z","timestamp":1768740487602,"version":"3.49.0"},"reference-count":35,"publisher":"Oxford University Press (OUP)","license":[{"start":{"date-parts":[[2016,11,7]],"date-time":"2016-11-07T00:00:00Z","timestamp":1478476800000},"content-version":"vor","delay-in-days":676,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2015,1,1]]},"DOI":"10.1093\/database\/bav031","type":"journal-article","created":{"date-parts":[[2015,4,5]],"date-time":"2015-04-05T01:38:23Z","timestamp":1428197903000},"source":"Crossref","is-referenced-by-count":20,"title":["dbPSP: a curated database for protein phosphorylation sites in prokaryotes"],"prefix":"10.1093","volume":"2015","author":[{"given":"Zhicheng","family":"Pan","sequence":"first","affiliation":[{"name":"School of Life Sciences, University of Science and Technology of China, Hefei 230027, China, 2 Department of Biomedical Engineering, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei 430074, China, and 3 State Key Laboratory of Biocontrol, School of Life Sciences, School of Advanced Computing, Sun Yat-sen University, Guangzhou 510275, China"},{"name":"School of Life Sciences, University of Science and Technology of China, Hefei 230027, China, 2 Department of Biomedical Engineering, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei 430074, China, and 3 State Key Laboratory of Biocontrol, School of Life Sciences, School of Advanced Computing, Sun Yat-sen University, Guangzhou 510275, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Bangshan","family":"Wang","sequence":"additional","affiliation":[{"name":"School of Life Sciences, University of Science and Technology of China, Hefei 230027, China, 2 Department of Biomedical Engineering, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei 430074, China, and 3 State Key Laboratory of Biocontrol, School of Life Sciences, School of Advanced Computing, Sun Yat-sen University, Guangzhou 510275, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ying","family":"Zhang","sequence":"additional","affiliation":[{"name":"School of Life Sciences, University of Science and Technology of China, Hefei 230027, China, 2 Department of Biomedical Engineering, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei 430074, China, and 3 State Key Laboratory of Biocontrol, School of Life Sciences, School of Advanced Computing, Sun Yat-sen University, Guangzhou 510275, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Yongbo","family":"Wang","sequence":"additional","affiliation":[{"name":"School of Life Sciences, University of Science and Technology of China, Hefei 230027, China, 2 Department of Biomedical Engineering, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei 430074, China, and 3 State Key Laboratory of Biocontrol, School of Life Sciences, School of Advanced Computing, Sun Yat-sen University, Guangzhou 510275, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Shahid","family":"Ullah","sequence":"additional","affiliation":[{"name":"School of Life Sciences, University of Science and Technology of China, Hefei 230027, China, 2 Department of Biomedical Engineering, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei 430074, China, and 3 State Key Laboratory of Biocontrol, School of Life Sciences, School of Advanced Computing, Sun Yat-sen University, Guangzhou 510275, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ren","family":"Jian","sequence":"additional","affiliation":[{"name":"School of Life Sciences, University of Science and Technology of China, Hefei 230027, China, 2 Department of Biomedical Engineering, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei 430074, China, and 3 State Key Laboratory of Biocontrol, School of Life Sciences, School of Advanced Computing, Sun Yat-sen University, Guangzhou 510275, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Zexian","family":"Liu","sequence":"additional","affiliation":[{"name":"School of Life Sciences, University of Science and Technology of China, Hefei 230027, China, 2 Department of Biomedical Engineering, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei 430074, China, and 3 State Key Laboratory of Biocontrol, School of Life Sciences, School of Advanced Computing, Sun Yat-sen University, Guangzhou 510275, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Yu","family":"Xue","sequence":"additional","affiliation":[{"name":"School of Life Sciences, University of Science and Technology of China, Hefei 230027, China, 2 Department of Biomedical Engineering, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei 430074, China, and 3 State Key Laboratory of Biocontrol, School of Life Sciences, School of Advanced Computing, Sun Yat-sen University, Guangzhou 510275, China"},{"name":"School of Life Sciences, University of Science and Technology of China, Hefei 230027, China, 2 Department of Biomedical Engineering, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei 430074, China, and 3 State Key Laboratory of Biocontrol, School of Life Sciences, School of Advanced Computing, Sun Yat-sen University, Guangzhou 510275, China"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2015,4,3]]},"reference":[{"key":"key\n\t\t\t\t20180618201726_bav031-B1","doi-asserted-by":"crossref","first-page":"613","DOI":"10.1038\/296613a0","article-title":"The role of protein phosphorylation in neural and hormonal control of cellular activity","volume":"296","author":"Cohen","year":"1982","journal-title":"Nature"},{"key":"key\n\t\t\t\t20180618201726_bav031-B2","doi-asserted-by":"crossref","first-page":"E127","DOI":"10.1038\/ncb0502-e127","article-title":"The origins of protein phosphorylation","volume":"4","author":"Cohen","year":"2002","journal-title":"Nat. Cell Biol."},{"key":"key\n\t\t\t\t20180618201726_bav031-B3","doi-asserted-by":"crossref","first-page":"109","DOI":"10.1016\/S0021-9258(18)76142-5","article-title":"Serinephosphoric acid obtained on hydrolysis of vitellinic acid","volume":"98","author":"Lipmann","year":"1932","journal-title":"J. Biol. Chem."},{"key":"key\n\t\t\t\t20180618201726_bav031-B4","doi-asserted-by":"crossref","first-page":"797","DOI":"10.1146\/annurev.biochem.78.070907.103047","article-title":"The chemical biology of protein phosphorylation","volume":"78","author":"Tarrant","year":"2009","journal-title":"Annu. Rev. Biochem."},{"key":"key\n\t\t\t\t20180618201726_bav031-B5","doi-asserted-by":"crossref","first-page":"530","DOI":"10.1038\/nrm2203","article-title":"Mechanisms of specificity in protein phosphorylation","volume":"8","author":"Ubersax","year":"2007","journal-title":"Nat. Rev. Mol. Cell Biol."},{"key":"key\n\t\t\t\t20180618201726_bav031-B6","doi-asserted-by":"crossref","first-page":"1111","DOI":"10.1126\/science.34215","article-title":"Phosphorylation of isocitrate dehydrogenase of Escherichia coli","volume":"203","author":"Garnak","year":"1979","journal-title":"Science"},{"key":"key\n\t\t\t\t20180618201726_bav031-B7","doi-asserted-by":"crossref","first-page":"5501","DOI":"10.1016\/S0021-9258(19)70654-1","article-title":"Light-regulated retinal-dependent reversible phosphorylation of Halobacterium proteins","volume":"255","author":"Spudich","year":"1980","journal-title":"J. Biol. Chem."},{"key":"key\n\t\t\t\t20180618201726_bav031-B8","doi-asserted-by":"crossref","first-page":"139","DOI":"10.1038\/336139a0","article-title":"Histidine phosphorylation and phosphoryl group transfer in bacterial chemotaxis","volume":"336","author":"Hess","year":"1988","journal-title":"Nature"},{"key":"key\n\t\t\t\t20180618201726_bav031-B9","doi-asserted-by":"crossref","first-page":"1037","DOI":"10.1111\/j.1365-2958.1993.tb00974.x","article-title":"Identification of a phosphorylation site and functional analysis of conserved aspartic acid residues of ompR, a transcriptional activator for ompF and ompC in Escherichia coli","volume":"10","author":"Delgado","year":"1993","journal-title":"Mol. Microbiol."},{"key":"key\n\t\t\t\t20180618201726_bav031-B10","doi-asserted-by":"crossref","first-page":"15461","DOI":"10.1073\/pnas.1205952109","article-title":"Protein cysteine phosphorylation of SarA\/MgrA family transcriptional regulators mediates bacterial virulence and antibiotic resistance","volume":"109","author":"Sun","year":"2012","journal-title":"Proc. Natl Acad. Sci. USA"},{"key":"key\n\t\t\t\t20180618201726_bav031-B11","doi-asserted-by":"crossref","first-page":"183","DOI":"10.1146\/annurev.biochem.69.1.183","article-title":"Two-component signal transduction","volume":"69","author":"Stock","year":"2000","journal-title":"Annu. Rev. Biochem."},{"key":"key\n\t\t\t\t20180618201726_bav031-B12","doi-asserted-by":"crossref","first-page":"125","DOI":"10.1159\/000089641","article-title":"Ser\/Thr\/Tyr protein phosphorylation in bacteria - for long time neglected, now well established","volume":"9","author":"Deutscher","year":"2005","journal-title":"J. Mol. Microbiol. Biotechnol."},{"key":"key\n\t\t\t\t20180618201726_bav031-B13","doi-asserted-by":"crossref","first-page":"199","DOI":"10.1146\/annurev.pharmtox.011008.145606","article-title":"Global and site-specific quantitative phosphoproteomics: principles and applications","volume":"49","author":"Macek","year":"2009","journal-title":"Annu. Rev. Pharmacol. Toxicol."},{"key":"key\n\t\t\t\t20180618201726_bav031-B14","doi-asserted-by":"crossref","first-page":"427","DOI":"10.1038\/nrm2900","article-title":"Decoding signalling networks by mass spectrometry-based proteomics","volume":"11","author":"Choudhary","year":"2010","journal-title":"Nat. Rev. Mol. Cell Biol."},{"key":"key\n\t\t\t\t20180618201726_bav031-B15","doi-asserted-by":"crossref","first-page":"1583","DOI":"10.1016\/j.celrep.2014.07.036","article-title":"Ultradeep human phosphoproteome reveals a distinct regulatory nature of tyr and ser\/thr-based signaling","volume":"8","author":"Sharma","year":"2014","journal-title":"Cell Rep."},{"key":"key\n\t\t\t\t20180618201726_bav031-B16","doi-asserted-by":"crossref","first-page":"697","DOI":"10.1074\/mcp.M600464-MCP200","article-title":"The serine\/threonine\/tyrosine phosphoproteome of the model bacterium Bacillus subtilis","volume":"6","author":"Macek","year":"2007","journal-title":"Mol. Cell Proteomics"},{"key":"key\n\t\t\t\t20180618201726_bav031-B17","doi-asserted-by":"crossref","first-page":"299","DOI":"10.1074\/mcp.M700311-MCP200","article-title":"Phosphoproteome analysis of E. coli reveals evolutionary conservation of bacterial Ser\/Thr\/Tyr phosphorylation","volume":"7","author":"Macek","year":"2008","journal-title":"Mol. Cell Proteomics"},{"key":"key\n\t\t\t\t20180618201726_bav031-B18","doi-asserted-by":"crossref","first-page":"1909","DOI":"10.1021\/pr4000043","article-title":"Global phosphoproteomic analysis reveals diverse functions of serine\/threonine\/tyrosine phosphorylation in the model cyanobacterium Synechococcus sp. strain PCC 7002","volume":"12","author":"Yang","year":"2013","journal-title":"J. Proteome Res."},{"key":"key\n\t\t\t\t20180618201726_bav031-B19","doi-asserted-by":"crossref","first-page":"3908","DOI":"10.1074\/mcp.M113.027375","article-title":"Archaeal signal transduction: impact of protein phosphatase deletions on cell size, motility, and energy metabolism in Sulfolobus acidocaldarius","volume":"12","author":"Reimann","year":"2013","journal-title":"Mol. Cell Proteomics"},{"key":"key\n\t\t\t\t20180618201726_bav031-B20","doi-asserted-by":"crossref","first-page":"7451","DOI":"10.1073\/pnas.1117483109","article-title":"Global impact of protein arginine phosphorylation on the physiology of Bacillus subtilis","volume":"109","author":"Elsholz","year":"2012","journal-title":"Proc. Natl Acad. Sci. USA"},{"key":"key\n\t\t\t\t20180618201726_bav031-B21","doi-asserted-by":"crossref","first-page":"485","DOI":"10.2174\/138920310791824138","article-title":"A summary of computational resources for protein phosphorylation","volume":"11","author":"Xue","year":"2010","journal-title":"Curr. Protein Pept. Sci."},{"key":"key\n\t\t\t\t20180618201726_bav031-B22","doi-asserted-by":"crossref","first-page":"1562","DOI":"10.1002\/pmic.200300711","article-title":"The phosphorylation site database: a guide to the serine-, threonine-, and\/or tyrosine-phosphorylated proteins in prokaryotic organisms","volume":"4","author":"Wurgler-Murphy","year":"2004","journal-title":"Proteomics"},{"key":"key\n\t\t\t\t20180618201726_bav031-B23","doi-asserted-by":"crossref","DOI":"10.1093\/database\/bau025","article-title":"SysPTM 2.0: an updated systematic resource for post-translational modification","author":"Li","year":"2014","journal-title":"Database"},{"key":"key\n\t\t\t\t20180618201726_bav031-B24","doi-asserted-by":"crossref","first-page":"D253","DOI":"10.1093\/nar\/gkq1159","article-title":"PHOSIDA 2011: the posttranslational modification database","volume":"39","author":"Gnad","year":"2011","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618201726_bav031-B25","doi-asserted-by":"crossref","first-page":"D622","DOI":"10.1093\/nar\/gkj083","article-title":"dbPTM: an information repository of protein post-translational modification","volume":"34","author":"Lee","year":"2006","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618201726_bav031-B26","doi-asserted-by":"crossref","first-page":"D204","DOI":"10.1093\/nar\/gku989","article-title":"UniProt: a hub for protein information","volume":"43","author":"The UniProt Consortium","year":"2015","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618201726_bav031-B27","doi-asserted-by":"crossref","first-page":"W29","DOI":"10.1093\/nar\/gkt282","article-title":"BLAST: a more efficient report with usability improvements","volume":"41","author":"Boratyn","year":"2013","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618201726_bav031-B28","doi-asserted-by":"crossref","first-page":"401","DOI":"10.1146\/annurev.bi.60.070191.002153","article-title":"Signal transduction pathways involving protein phosphorylation in prokaryotes","volume":"60","author":"Bourret","year":"1991","journal-title":"Annu. Rev. Biochem."},{"key":"key\n\t\t\t\t20180618201726_bav031-B29","doi-asserted-by":"crossref","first-page":"97","DOI":"10.1146\/annurev.mi.42.100188.000525","article-title":"Protein phosphorylation in prokaryotes","volume":"42","author":"Cozzone","year":"1988","journal-title":"Annu. Rev. Microbiol."},{"key":"key\n\t\t\t\t20180618201726_bav031-B30","doi-asserted-by":"crossref","first-page":"ra2","DOI":"10.1126\/scisignal.1159433","article-title":"Linear motif atlas for phosphorylation-dependent signaling","volume":"1","author":"Miller","year":"2008","journal-title":"Sci. Signal."},{"key":"key\n\t\t\t\t20180618201726_bav031-B31","doi-asserted-by":"crossref","first-page":"D261","DOI":"10.1093\/nar\/gkq1104","article-title":"Phospho.ELM: a database of phosphorylation sites\u2013update 2011","volume":"39","author":"Dinkel","year":"2011","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618201726_bav031-B32","doi-asserted-by":"crossref","first-page":"1188","DOI":"10.1101\/gr.849004","article-title":"WebLogo: a sequence logo generator","volume":"14","author":"Crooks","year":"2004","journal-title":"Genome Res."},{"key":"key\n\t\t\t\t20180618201726_bav031-B33","doi-asserted-by":"crossref","first-page":"1211","DOI":"10.1038\/nmeth.2646","article-title":"pLogo: a probabilistic approach to visualizing sequence motifs","volume":"10","author":"O\u2019Shea","year":"2013","journal-title":"Nat. Methods"},{"key":"key\n\t\t\t\t20180618201726_bav031-B34","doi-asserted-by":"crossref","first-page":"D396","DOI":"10.1093\/nar\/gkn803","article-title":"The GOA database in 2009\u2013an integrated gene ontology annotation resource","volume":"37","author":"Barrell","year":"2009","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20180618201726_bav031-B35","doi-asserted-by":"crossref","first-page":"2737","DOI":"10.1039\/c1mb05217a","article-title":"GPS-PUP: computational prediction of pupylation sites in prokaryotic proteins","volume":"7","author":"Liu","year":"2011","journal-title":"Mol. Biosyst."}],"container-title":["Database"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/database\/article-pdf\/doi\/10.1093\/database\/bav031\/7298678\/bav031.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,5,4]],"date-time":"2022-05-04T09:18:46Z","timestamp":1651655926000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/database\/article\/doi\/10.1093\/database\/bav031\/2433163"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2015,1,1]]},"references-count":35,"URL":"https:\/\/doi.org\/10.1093\/database\/bav031","relation":{},"ISSN":["1758-0463"],"issn-type":[{"value":"1758-0463","type":"electronic"}],"subject":[],"published-other":{"date-parts":[[2015]]},"published":{"date-parts":[[2015,1,1]]}}}