{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,11,22]],"date-time":"2025-11-22T11:05:29Z","timestamp":1763809529897},"reference-count":27,"publisher":"Oxford University Press (OUP)","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Database"],"published-print":{"date-parts":[[2016]]},"DOI":"10.1093\/database\/baw064","type":"journal-article","created":{"date-parts":[[2016,5,13]],"date-time":"2016-05-13T02:59:59Z","timestamp":1463108399000},"page":"baw064","source":"Crossref","is-referenced-by-count":13,"title":["BelSmile: a biomedical semantic role labeling approach for extracting biological expression language from text"],"prefix":"10.1093","volume":"2016","author":[{"given":"Po-Ting","family":"Lai","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Yu-Yan","family":"Lo","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ming-Siang","family":"Huang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Yu-Cheng","family":"Hsiao","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Richard Tzong-Han","family":"Tsai","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2016,5,12]]},"reference":[{"key":"2016051219594383000_2016.0.baw064.1","unstructured":"Fluck J. Madan S. Ellendorff T.R . . (2015) Track 4 overview: extraction of causal network information in biological expression language (BEL). In Fifth BioCreative Challenge Evaluation Workshop. BioCreative Organizing Committee. Sevilla, Spain, 333\u2013346."},{"key":"2016051219594383000_2016.0.baw064.2","doi-asserted-by":"crossref","first-page":"S11","DOI":"10.1186\/1471-2105-7-S5-S11","article-title":"NERBio: using selected word conjunctions, term normalization, and global patterns to improve biomedical named entity recognition","volume":"7(Suppl 5)","author":"Tsai","year":"2006","journal-title":"BMC Bioinformatics"},{"key":"2016051219594383000_2016.0.baw064.3","doi-asserted-by":"crossref","first-page":"S14.","DOI":"10.1186\/1758-2946-7-S1-S14","article-title":"Enhancing of chemical compound and drug name recognition using representative tag scheme and fine-grained tokenization","volume":"7(Suppl 1)","author":"Dai","year":"2015","journal-title":"J. Cheminform"},{"key":"2016051219594383000_2016.0.baw064.4","doi-asserted-by":"crossref","first-page":"160\u2013160.","DOI":"10.1186\/1471-2105-15-160","article-title":"A resource-saving collective approach to biomedical semantic role labeling","volume":"15","author":"Tsai","year":"2014","journal-title":"BMC Bioinformatics"},{"key":"2016051219594383000_2016.0.baw064.5","doi-asserted-by":"crossref","first-page":"S7","DOI":"10.1186\/1471-2105-12-S8-S7","article-title":"Multistage gene normalization for full-text articles with context-based species filtering for dynamic dictionary entry selection","volume":"12(Suppl 8)","author":"Tsai","year":"2011","journal-title":"BMC Bioinformatics"},{"key":"2016051219594383000_2016.0.baw064.6","doi-asserted-by":"crossref","unstructured":"Kim J.D Ohta T. Tsuruoka Y . . (2004) Introduction to the bio-entity recognition task at JNLPBA. In: Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications. Association for Computational Linguistics, Geneva, Switzerland. pp. 70\u20135.","DOI":"10.3115\/1567594.1567610"},{"key":"2016051219594383000_2016.0.baw064.7","unstructured":"Kim J.D. , Pyysalo S. , Ohta T . . (2011) Overview of BioNLP shared task 2011 . In: Proceedings of the BioNLP Shared Task 2011 Workshop. Association for Computational Linguistics, Portland, OR. pp. 1\u20136."},{"key":"2016051219594383000_2016.0.baw064.8","unstructured":"N\u00e9dellec C. , Bossy R. , Kim J.D . . (2013) Overview of BioNLP shared task 2013. In the BioNLP Shared Task 2013 Workshop. Omnipress, Inc. Sofia, Bulgaria, 1\u20137."},{"key":"2016051219594383000_2016.0.baw064.9","doi-asserted-by":"crossref","unstructured":"Ohta T. Pyysalo S. Rak R. . (2013) Overview of the Pathway Curation (PC) Task of BioNLP Shared Task 2013.","DOI":"10.1186\/1471-2105-13-S11-S2"},{"key":"2016051219594383000_2016.0.baw064.10","doi-asserted-by":"crossref","first-page":"S5","DOI":"10.1186\/1471-2105-7-S3-S5","article-title":"A critical review of PASBio's argument structures for biomedical verbs","volume":"7(Suppl 3)","author":"Cohen","year":"2006","journal-title":"BMC Bioinformatics"},{"key":"2016051219594383000_2016.0.baw064.11","doi-asserted-by":"publisher","DOI":"10.1007\/s10994-006-5833-1"},{"key":"2016051219594383000_2016.0.baw064.12","doi-asserted-by":"crossref","first-page":"S18.","DOI":"10.1186\/1471-2105-9-S12-S18","article-title":"Semi-automatic conversion of BioProp semantic annotation to PASBio annotation","volume":"9(Suppl 12)","author":"Tsai","year":"2008","journal-title":"BMC Bioinformatics"},{"key":"2016051219594383000_2016.0.baw064.13","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-8-325"},{"key":"2016051219594383000_2016.0.baw064.14","unstructured":"Fluck J. , Madan S. , Ansari S. . Training corpora for the extraction of causal relationships coded in Biological Expression Language (BEL). Database, in this issue."},{"key":"2016051219594383000_2016.0.baw064.15","unstructured":"Fabio R. , Ellendorff T.R. Madan S. . BioCreative V Track 4: A Shared Task for the Extraction of Causal Network Information in Biological Expression Language. Database, in this issue"},{"key":"2016051219594383000_2016.0.baw064.16","unstructured":"Choi M. Liu H. Baumgartner W . . (2015) Integrating Coreference Resolution for BEL Statement Generation. in the Fifth BioCreative Challenge Evaluation Workshop. BioCreative Organizing Committee. Sevilla, Spain, pp. 356\u2013359."},{"key":"2016051219594383000_2016.0.baw064.17","unstructured":"Bj\u00f6rne J. Salakoski T. (2011) Generalizing biomedical event extraction. In: Proceedings of the BioNLP Shared Task 2011 Workshop, Association for Computational Linguistics, Portland, OR. pp. 183-191."},{"key":"2016051219594383000_2016.0.baw064.18","unstructured":"Elayavilli R.K. Rastegar-Mojarad M. Liu H. (2015) Adapting a rule-based relation extraction system for BioCreative V BEL task. In the Fifth BioCreative Challenge Evaluation Workshop. BioCreative Organizing Committee. Sevilla, Spain, pp. 356\u2013359."},{"key":"2016051219594383000_2016.0.baw064.19","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkt441"},{"key":"2016051219594383000_2016.0.baw064.20","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btq075"},{"key":"2016051219594383000_2016.0.baw064.21","unstructured":"Kingsbury P. Palmer M. (2002) From Treebank to PropBank. Proceedings of the Third International Conference on Language Resources and Evaluation (LREC-2002), Las Palmas, Canary Islands - Spain. European Language Resources Association (ELRA)."},{"key":"2016051219594383000_2016.0.baw064.22","doi-asserted-by":"crossref","unstructured":"Chou W.C. Tsai R.T.H. Su Y.S. . . (2006) A semi-automatic method for annotating a biomedical proposition bank. In: Proceedings of the Workshop on Frontiers in Linguistically Annotated Corpora 2006. Association for Computational Linguistics, Sydney, Australia. pp. 5\u201312.","DOI":"10.3115\/1641991.1641993"},{"key":"2016051219594383000_2016.0.baw064.23","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-9-1"},{"key":"2016051219594383000_2016.0.baw064.24","doi-asserted-by":"crossref","unstructured":"Kudo T. Matsumoto Y. (2001) Chunking with support vector machines. In: Proceedings of the second meeting of the North American Chapter of the Association for Computational Linguistics on Language Technologies. Association for Computational Linguistics, Pittsburgh, PA. pp. 1\u20138.","DOI":"10.3115\/1073336.1073361"},{"key":"2016051219594383000_2016.0.baw064.25","unstructured":"Bjorne J. Salakoski T. (2013) TEES 2.1: Automated Annotation Scheme Learning in the BioNLP 2013 Shared Task. in the BioNLP Shared Task 2013 Workshop."},{"key":"2016051219594383000_2016.0.baw064.26","doi-asserted-by":"crossref","unstructured":"Charniak E. Johnson M. (2005) Coarse-to-fine n-best parsing and MaxEnt discriminative reranking. In: Proceedings of the 43rd Annual Meeting on Association for Computational Linguistics. Association for Computational Linguistics, Stroudsburg, PA, USA, pp. 173\u2013180.","DOI":"10.3115\/1219840.1219862"},{"key":"2016051219594383000_2016.0.baw064.27","unstructured":"Mcclosky D. (2010) Any Domain Parsing: Automatic Domain Adaptation for Natural Language Parsing. Ph.D. Dissertation. Brown University, Providence, RI, USA."}],"container-title":["Database"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/database\/article-pdf\/doi\/10.1093\/database\/baw064\/8224386\/baw064.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,6,22]],"date-time":"2022-06-22T09:40:26Z","timestamp":1655890826000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/database\/article-lookup\/doi\/10.1093\/database\/baw064"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2016]]},"references-count":27,"alternative-id":["10.1093\/database\/baw064"],"URL":"https:\/\/doi.org\/10.1093\/database\/baw064","relation":{},"ISSN":["1758-0463"],"issn-type":[{"value":"1758-0463","type":"electronic"}],"subject":[],"published":{"date-parts":[[2016]]}}}