{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,17]],"date-time":"2026-04-17T15:38:53Z","timestamp":1776440333753,"version":"3.51.2"},"reference-count":25,"publisher":"Oxford University Press (OUP)","license":[{"start":{"date-parts":[[2018,4,27]],"date-time":"2018-04-27T00:00:00Z","timestamp":1524787200000},"content-version":"vor","delay-in-days":116,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2018,1,1]]},"DOI":"10.1093\/database\/bay040","type":"journal-article","created":{"date-parts":[[2018,4,16]],"date-time":"2018-04-16T19:09:56Z","timestamp":1523905796000},"source":"Crossref","is-referenced-by-count":91,"title":["AbDb: antibody structure database\u2014a database of PDB-derived antibody structures"],"prefix":"10.1093","volume":"2018","author":[{"given":"Saba","family":"Ferdous","sequence":"first","affiliation":[{"name":"Division of Biosciences, Institute of Structural and Molecular Biology, University College London, Darwin Building, Gower Street, London WC1E 6BT, UK"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2835-2572","authenticated-orcid":false,"given":"Andrew C R","family":"Martin","sequence":"additional","affiliation":[{"name":"Division of Biosciences, Institute of Structural and Molecular Biology, University College London, Darwin Building, Gower Street, London WC1E 6BT, UK"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2018,4,27]]},"reference":[{"key":"key\n\t\t\t\t2019010806584339200_bay040-B1","doi-asserted-by":"crossref","first-page":"297.","DOI":"10.1038\/nri2763","article-title":"Therapeutic antibodies: past, present and future","volume":"10","author":"Leavy","year":"2010","journal-title":"Nature Rev. Immunol"},{"key":"key\n\t\t\t\t2019010806584339200_bay040-B2","doi-asserted-by":"crossref","first-page":"302","DOI":"10.3389\/fimmu.2013.00302","article-title":"The structural basis of antibody-antigen recognition","volume":"4","author":"Sela-Culang","year":"2013","journal-title":"Front. Immunol"},{"key":"key\n\t\t\t\t2019010806584339200_bay040-B3","doi-asserted-by":"crossref","first-page":"205","DOI":"10.1093\/nar\/29.1.205","article-title":"Kabat database and its applications: future directions","volume":"29","author":"Johnson","year":"2001","journal-title":"Nucl. Acids Res"},{"key":"key\n\t\t\t\t2019010806584339200_bay040-B4","doi-asserted-by":"crossref","first-page":"D671","DOI":"10.1093\/nar\/gki088","article-title":"VBASE2, an integrative V gene database","volume":"33","author":"Retter","year":"2005","journal-title":"Nucl. Acids Res"},{"key":"key\n\t\t\t\t2019010806584339200_bay040-B5","volume-title":"Handbook of Therapeutic Antibodies Vol 1 (Technologies)","author":"Martin","year":"2007","edition":"1st edn."},{"key":"key\n\t\t\t\t2019010806584339200_bay040-B6","doi-asserted-by":"crossref","first-page":"356","DOI":"10.1016\/j.jmb.2016.08.019","article-title":"abYsis: integrated antibody sequence and structure\u2014management, analysis and prediction","volume":"429","author":"Swindells","year":"2017","journal-title":"J. Mol. Biol"},{"key":"key\n\t\t\t\t2019010806584339200_bay040-B7","doi-asserted-by":"crossref","first-page":"D1006","DOI":"10.1093\/nar\/gkn838","article-title":"IMGT\u00ae, the international immunogenetics information system","volume":"37","author":"Lefranc","year":"2009","journal-title":"Nucl. Acids Res"},{"key":"key\n\t\t\t\t2019010806584339200_bay040-B8","doi-asserted-by":"crossref","first-page":"D1230","DOI":"10.1093\/nar\/gkr806","article-title":"A database of immunoglobulins with integrated tools: dIGIT","volume":"40","author":"Chailyan","year":"2012","journal-title":"Nucl. Acids Res"},{"key":"key\n\t\t\t\t2019010806584339200_bay040-B9","doi-asserted-by":"crossref","first-page":"D432","DOI":"10.1093\/nar\/gku1106","article-title":"PyIgClassify: a database of antibody CDR structural classifications","volume":"43","author":"Adolf-Bryfogle","year":"2015","journal-title":"Nucl. Acids Res"},{"key":"key\n\t\t\t\t2019010806584339200_bay040-B10","doi-asserted-by":"crossref","first-page":"175","DOI":"10.1093\/bioinformatics\/18.1.175","article-title":"SACS: self-maintaining database of antibody crystal structure information","volume":"18","author":"Allcorn","year":"2002","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t2019010806584339200_bay040-B11","doi-asserted-by":"crossref","first-page":"D1140","DOI":"10.1093\/nar\/gkt1043","article-title":"SAbDab: the structural antibody database","volume":"42","author":"Dunbar","year":"2014","journal-title":"Nucl. Acids Res"},{"key":"key\n\t\t\t\t2019010806584339200_bay040-B12","first-page":"627","volume-title":"Protein Crystallography. Methods in Molecular Biology Vol 1607","author":"Burley","year":"2017"},{"key":"key\n\t\t\t\t2019010806584339200_bay040-B13","doi-asserted-by":"crossref","first-page":"3832","DOI":"10.1016\/j.molimm.2008.05.022","article-title":"Analysis and improvements to Kabat and structurally correct numbering of antibody variable domains","volume":"45","author":"Abhinandan","year":"2008","journal-title":"Mol. Immunol"},{"key":"key\n\t\t\t\t2019010806584339200_bay040-B14","doi-asserted-by":"crossref","first-page":"927","DOI":"10.1006\/jmbi.1997.1354","article-title":"Standard conformations for the canonical structures of immunoglobulins","volume":"273","author":"Al-Lazikani","year":"1997","journal-title":"J. Mol. Biol"},{"key":"key\n\t\t\t\t2019010806584339200_bay040-B15","doi-asserted-by":"crossref","first-page":"800","DOI":"10.1006\/jmbi.1996.0617","article-title":"Structural families of loops in homologous proteins: automatic classification, modelling and application to antibodies","volume":"263","author":"Martin","year":"1996","journal-title":"J. Mol. Biol"},{"key":"key\n\t\t\t\t2019010806584339200_bay040-B16","doi-asserted-by":"crossref","first-page":"852","DOI":"10.1016\/j.jmb.2007.02.100","article-title":"Analyzing the \u201cdegree of humanness\u201d of antibody sequences","volume":"369","author":"Abhinandan","year":"2007","journal-title":"J. Mol. Biol"},{"key":"key\n\t\t\t\t2019010806584339200_bay040-B17","doi-asserted-by":"crossref","first-page":"304","DOI":"10.1016\/j.molimm.2012.03.030","article-title":"An analysis of B-cell epitope discontinuity","volume":"51","author":"Sivalingam","year":"2012","journal-title":"Molec. Immunol"},{"key":"key\n\t\t\t\t2019010806584339200_bay040-B18","doi-asserted-by":"crossref","first-page":"5399","DOI":"10.1073\/pnas.97.10.5399","article-title":"Crystal structure of a Staphylococcus aureus protein A domain complexed with the Fab fragment of a human IgM antibody: structural basis for recognition of B-cell receptors and superantigen activity","volume":"97","author":"Graille","year":"2000","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"key\n\t\t\t\t2019010806584339200_bay040-B19","volume-title":"Sequences of Proteins of Immunological Interest","author":"Kabat","year":"1991","edition":"5th edn."},{"key":"key\n\t\t\t\t2019010806584339200_bay040-B20","doi-asserted-by":"crossref","first-page":"877","DOI":"10.1038\/342877a0","article-title":"Conformations of immunoglobulin hypervariable regions","volume":"342","author":"Chothia","year":"1989","journal-title":"Nature"},{"key":"key\n\t\t\t\t2019010806584339200_bay040-B21","doi-asserted-by":"crossref","first-page":"4017","DOI":"10.1093\/bioinformatics\/btv482","article-title":"BiopLib and BiopTools\u2014a C programming library and toolset for manipulating protein structure","volume":"31","author":"Porter","year":"2015","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t2019010806584339200_bay040-B22","doi-asserted-by":"crossref","first-page":"6056","DOI":"10.1073\/pnas.1501176112","article-title":"A site of Varicella zoster virus vulnerability identified by structural studies of neutralizing antibodies bound to the glycoprotein complex gHgL","volume":"112","author":"Xing","year":"2015","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"key\n\t\t\t\t2019010806584339200_bay040-B23","doi-asserted-by":"crossref","first-page":"761","DOI":"10.1016\/0022-2836(84)90037-8","article-title":"Crystalline monoclonal antibody Fabs complexed to hen egg white lysozyme","volume":"180","author":"Silverton","year":"1984","journal-title":"J. Mol. Biol"},{"key":"key\n\t\t\t\t2019010806584339200_bay040-B24","doi-asserted-by":"crossref","first-page":"5879","DOI":"10.1073\/pnas.85.16.5879","article-title":"Protein engineering of antibody binding sites: recovery of specific activity in an anti-digoxin single-chain Fv analogue produced in Escherichia coli","volume":"85","author":"Huston","year":"1988","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"key\n\t\t\t\t2019010806584339200_bay040-B25","doi-asserted-by":"crossref","first-page":"689","DOI":"10.1093\/protein\/gzq043","article-title":"Analysis and prediction of VH\/VL packing in antibodies","volume":"23","author":"Abhinandan","year":"2010","journal-title":"Protein Eng. Des. Sel"}],"container-title":["Database"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/database\/article-pdf\/doi\/10.1093\/database\/bay040\/27438252\/bay040.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,9,2]],"date-time":"2023-09-02T04:19:49Z","timestamp":1693628389000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/database\/article\/doi\/10.1093\/database\/bay040\/4989324"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2018,1,1]]},"references-count":25,"URL":"https:\/\/doi.org\/10.1093\/database\/bay040","relation":{},"ISSN":["1758-0463"],"issn-type":[{"value":"1758-0463","type":"electronic"}],"subject":[],"published-other":{"date-parts":[[2018]]},"published":{"date-parts":[[2018,1,1]]}}}