{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,20]],"date-time":"2026-01-20T08:51:51Z","timestamp":1768899111848,"version":"3.49.0"},"reference-count":38,"publisher":"Oxford University Press (OUP)","license":[{"start":{"date-parts":[[2018,7,24]],"date-time":"2018-07-24T00:00:00Z","timestamp":1532390400000},"content-version":"vor","delay-in-days":204,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["81670208"],"award-info":[{"award-number":["81670208"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Shanghai Committee of Science and Technology","award":["16140904200"],"award-info":[{"award-number":["16140904200"]}]},{"name":"Shanghai Committee of Science and Technology","award":["18JC1414300"],"award-info":[{"award-number":["18JC1414300"]}]},{"name":"Fund of the Key Laboratory of Regenerative Biology of Chinese Academy of Science","award":["KLRB201609"],"award-info":[{"award-number":["KLRB201609"]}]},{"name":"Fund for Subject Pi lot Program of Tongji University to Luying Peng"},{"name":"Students Innovation Training Program"},{"name":"Shanghai Committee of Science and Technology","award":["16140904200"],"award-info":[{"award-number":["16140904200"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2018,1,1]]},"DOI":"10.1093\/database\/bay067","type":"journal-article","created":{"date-parts":[[2018,6,13]],"date-time":"2018-06-13T07:07:58Z","timestamp":1528873678000},"source":"Crossref","is-referenced-by-count":16,"title":["HDncRNA: a comprehensive database of non-coding RNAs associated with heart diseases"],"prefix":"10.1093","volume":"2018","author":[{"given":"Wen-Jing","family":"Wang","sequence":"first","affiliation":[{"name":"Key Laboratory of Arrhythmias, Ministry of Education, Tongji University School of Medicine, No. 150, Jimo Road, Pudong New District, Shanghai, China"},{"name":"Research Center for Translational Medicine, Shanghai East Hospital, Tongji University School of Medicine, No. 150, Jimo Road, Pudong New District, Shanghai, China"},{"name":"Department of Pathology and Pathophysiology, Tongji University School of Medicine, No. 1239, Siping Road, Yangpu District, Shanghai, China"}]},{"given":"Yu-Mei","family":"Wang","sequence":"additional","affiliation":[{"name":"Key Laboratory of Arrhythmias, Ministry of Education, Tongji University School of Medicine, No. 150, Jimo Road, Pudong New District, Shanghai, China"},{"name":"Research Center for Translational Medicine, Shanghai East Hospital, Tongji University School of Medicine, No. 150, Jimo Road, Pudong New District, Shanghai, China"},{"name":"Department of Pathology and Pathophysiology, Tongji University School of Medicine, No. 1239, Siping Road, Yangpu District, Shanghai, China"}]},{"given":"Yi","family":"Hu","sequence":"additional","affiliation":[{"name":"Key Laboratory of Arrhythmias, Ministry of Education, Tongji University School of Medicine, No. 150, Jimo Road, Pudong New District, Shanghai, China"},{"name":"Research Center for Translational Medicine, Shanghai East Hospital, Tongji University School of Medicine, No. 150, Jimo Road, Pudong New District, Shanghai, China"},{"name":"Department of Pathology and Pathophysiology, Tongji University School of Medicine, No. 1239, Siping Road, Yangpu District, Shanghai, China"}]},{"given":"Qin","family":"Lin","sequence":"additional","affiliation":[{"name":"Key Laboratory of Arrhythmias, Ministry of Education, Tongji University School of Medicine, No. 150, Jimo Road, Pudong New District, Shanghai, China"},{"name":"Research Center for Translational Medicine, Shanghai East Hospital, Tongji University School of Medicine, No. 150, Jimo Road, Pudong New District, Shanghai, China"},{"name":"Department of Pathology and Pathophysiology, Tongji University School of Medicine, No. 1239, Siping Road, Yangpu District, Shanghai, China"}]},{"given":"Rou","family":"Chen","sequence":"additional","affiliation":[{"name":"Key Laboratory of Arrhythmias, Ministry of Education, Tongji University School of Medicine, No. 150, Jimo Road, Pudong New District, Shanghai, China"},{"name":"Research Center for Translational Medicine, Shanghai East Hospital, Tongji University School of Medicine, No. 150, Jimo Road, Pudong New District, Shanghai, China"},{"name":"Department of Pathology and Pathophysiology, Tongji University School of Medicine, No. 1239, Siping Road, Yangpu District, Shanghai, China"}]},{"given":"Huan","family":"Liu","sequence":"additional","affiliation":[{"name":"Key Laboratory of Arrhythmias, Ministry of Education, Tongji University School of Medicine, No. 150, Jimo Road, Pudong New District, Shanghai, China"},{"name":"Research Center for Translational Medicine, Shanghai East Hospital, Tongji University School of Medicine, No. 150, Jimo Road, Pudong New District, Shanghai, China"},{"name":"Department of Pathology and Pathophysiology, Tongji University School of Medicine, No. 1239, Siping Road, Yangpu District, Shanghai, China"}]},{"given":"Wen-Ze","family":"Cao","sequence":"additional","affiliation":[{"name":"Key Laboratory of Arrhythmias, Ministry of Education, Tongji University School of Medicine, No. 150, Jimo Road, Pudong New District, Shanghai, China"},{"name":"Research Center for Translational Medicine, Shanghai East Hospital, Tongji University School of Medicine, No. 150, Jimo Road, Pudong New District, Shanghai, China"},{"name":"Department of Pathology and Pathophysiology, Tongji University School of Medicine, No. 1239, Siping Road, Yangpu District, Shanghai, China"}]},{"given":"Hui-Fang","family":"Zhu","sequence":"additional","affiliation":[{"name":"Key Laboratory of Arrhythmias, Ministry of Education, Tongji University School of Medicine, No. 150, Jimo Road, Pudong New District, Shanghai, China"},{"name":"Research Center for Translational Medicine, Shanghai East Hospital, Tongji University School of Medicine, No. 150, Jimo Road, Pudong New District, Shanghai, China"},{"name":"Department of Pathology and Pathophysiology, Tongji University School of Medicine, No. 1239, Siping Road, Yangpu District, Shanghai, China"}]},{"given":"Chang","family":"Tong","sequence":"additional","affiliation":[{"name":"Key Laboratory of Arrhythmias, Ministry of Education, Tongji University School of Medicine, No. 150, Jimo Road, Pudong New District, Shanghai, China"},{"name":"Research Center for Translational Medicine, Shanghai East Hospital, Tongji University School of Medicine, No. 150, Jimo Road, Pudong New District, Shanghai, China"}]},{"given":"Li","family":"Li","sequence":"additional","affiliation":[{"name":"Key Laboratory of Arrhythmias, Ministry of Education, Tongji University School of Medicine, No. 150, Jimo Road, Pudong New District, Shanghai, China"},{"name":"Research Center for Translational Medicine, Shanghai East Hospital, Tongji University School of Medicine, No. 150, Jimo Road, Pudong New District, Shanghai, China"},{"name":"Department of Pathology and Pathophysiology, Tongji University School of Medicine, No. 1239, Siping Road, Yangpu District, Shanghai, China"}]},{"given":"Lu-Ying","family":"Peng","sequence":"additional","affiliation":[{"name":"Key Laboratory of Arrhythmias, Ministry of Education, Tongji University School of Medicine, No. 150, Jimo Road, Pudong New District, Shanghai, China"},{"name":"Research Center for Translational Medicine, Shanghai East Hospital, Tongji University School of Medicine, No. 150, Jimo Road, Pudong New District, Shanghai, China"},{"name":"Department of Pathology and Pathophysiology, Tongji University School of Medicine, No. 1239, Siping Road, Yangpu District, Shanghai, China"}]}],"member":"286","published-online":{"date-parts":[[2018,7,24]]},"reference":[{"key":"key\n\t\t\t\t2019010807080459800_bay067-B1","volume-title":"Braunwald\u2019s Heart Disease E-Book: A Textbook of Cardiovascular Medicine","author":"Bonow","year":"2011"},{"key":"key\n\t\t\t\t2019010807080459800_bay067-B2","doi-asserted-by":"crossref","first-page":"401","DOI":"10.1038\/nrendo.2009.102","article-title":"Epigenetic mechanisms that underpin metabolic and cardiovascular diseases","volume":"5","author":"Gluckman","year":"2009","journal-title":"Nat. Rev. Endocrinol."},{"key":"key\n\t\t\t\t2019010807080459800_bay067-B3","doi-asserted-by":"crossref","first-page":"R17","DOI":"10.1093\/hmg\/ddl046","article-title":"Non-coding RNA","volume":"15","author":"Mattick","year":"2006","journal-title":"Hum. Mol. Genet."},{"key":"key\n\t\t\t\t2019010807080459800_bay067-B4","doi-asserted-by":"crossref","first-page":"101","DOI":"10.1038\/nature11233","article-title":"Landscape of transcription in human cells","volume":"489","author":"Djebali","year":"2012","journal-title":"Nature"},{"key":"key\n\t\t\t\t2019010807080459800_bay067-B5","doi-asserted-by":"crossref","first-page":"737","DOI":"10.1161\/CIRCRESAHA.116.302521","article-title":"Long noncoding RNAs in cardiovascular diseases","volume":"116","author":"Uchida","year":"2015","journal-title":"Circ. Res."},{"key":"key\n\t\t\t\t2019010807080459800_bay067-B6","doi-asserted-by":"crossref","first-page":"613","DOI":"10.1038\/nm1582","article-title":"MicroRNA-133 controls cardiac hypertrophy","volume":"13","author":"Care","year":"2007","journal-title":"Nat. Med."},{"key":"key\n\t\t\t\t2019010807080459800_bay067-B7","doi-asserted-by":"crossref","first-page":"20045","DOI":"10.1074\/jbc.M801035200","article-title":"Down-regulation of miR-1\/miR-133 contributes to re-expression of pacemaker channel genes HCN2 and HCN4 in hypertrophic heart","volume":"283","author":"Luo","year":"2008","journal-title":"J. Biol. Chem."},{"key":"key\n\t\t\t\t2019010807080459800_bay067-B8","doi-asserted-by":"crossref","first-page":"980","DOI":"10.1038\/nature07511","article-title":"MicroRNA-21 contributes to myocardial disease by stimulating MAP kinase signalling in fibroblasts","volume":"456","author":"Thum","year":"2008","journal-title":"Nature"},{"key":"key\n\t\t\t\t2019010807080459800_bay067-B9","doi-asserted-by":"crossref","first-page":"1377","DOI":"10.1161\/CIRCRESAHA.114.302476","article-title":"The long noncoding RNA CHRF regulates cardiac hypertrophy by targeting miR-489","volume":"114","author":"Wang","year":"2014","journal-title":"Circ. Res."},{"key":"key\n\t\t\t\t2019010807080459800_bay067-B10","doi-asserted-by":"crossref","first-page":"1131","DOI":"10.1038\/nm.4179","article-title":"The long noncoding RNA Chaer defines an epigenetic checkpoint in cardiac hypertrophy","volume":"22","author":"Wang","year":"2016","journal-title":"Nat. Med."},{"key":"key\n\t\t\t\t2019010807080459800_bay067-B11","doi-asserted-by":"crossref","first-page":"155","DOI":"10.1161\/CIRCRESAHA.117.311802","article-title":"Long noncoding RNA discovery in cardiovascular disease: decoding form to function","volume":"122","author":"Sallam","year":"2018","journal-title":"Circ. Res."},{"key":"key\n\t\t\t\t2019010807080459800_bay067-B12","doi-asserted-by":"crossref","first-page":"860","DOI":"10.1038\/nrd3864","article-title":"MicroRNA therapeutics for cardiovascular disease: opportunities and obstacles","volume":"11","author":"Van Rooij","year":"2012","journal-title":"Nat. Rev. Drug Discov."},{"key":"key\n\t\t\t\t2019010807080459800_bay067-B13","doi-asserted-by":"crossref","first-page":"D68","DOI":"10.1093\/nar\/gkt1181","article-title":"miRBase: annotating high confidence microRNAs using deep sequencing data","volume":"42","author":"Kozomara","year":"2014","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019010807080459800_bay067-B14","doi-asserted-by":"crossref","first-page":"D168","DOI":"10.1093\/nar\/gku988","article-title":"lncRNAdb v2. 0: expanding the reference database for functional long noncoding RNAs","volume":"43","author":"Quek","year":"2014","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019010807080459800_bay067-B15","doi-asserted-by":"crossref","first-page":"1775","DOI":"10.1101\/gr.132159.111","article-title":"The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression","volume":"22","author":"Derrien","year":"2012","journal-title":"Genome Res."},{"key":"key\n\t\t\t\t2019010807080459800_bay067-B16","doi-asserted-by":"crossref","first-page":"D203","DOI":"10.1093\/nar\/gkv1252","article-title":"NONCODE 2016: an informative and valuable data source of long non-coding RNAs","volume":"44","author":"Zhao","year":"2015","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019010807080459800_bay067-B17","doi-asserted-by":"crossref","first-page":"D1070","DOI":"10.1093\/nar\/gkt1023","article-title":"HMDD v2. 0: a database for experimentally supported human microRNA and disease associations","volume":"42","author":"Li","year":"2014","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019010807080459800_bay067-B18","doi-asserted-by":"crossref","first-page":"D98","DOI":"10.1093\/nar\/gkn714","article-title":"miR2Disease: a manually curated database for microRNA deregulation in human disease","volume":"37","author":"Jiang","year":"2009","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019010807080459800_bay067-B19","doi-asserted-by":"crossref","first-page":"D983","DOI":"10.1093\/nar\/gks1099","article-title":"LncRNADisease: a database for long-non-coding RNA-associated diseases","volume":"41","author":"Chen","year":"2013","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019010807080459800_bay067-B20","doi-asserted-by":"crossref","first-page":"D991","DOI":"10.1093\/nar\/gks1193","article-title":"NCBI GEO: archive for functional genomics data sets\u2014update","volume":"41","author":"Barrett","year":"2013","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019010807080459800_bay067-B21","first-page":"2233","article-title":"The Mini-International Neuropsychiatric Interview (MINI): the development and validation of a structured diagnostic psychiatric interview for DSM-IVand ICD-10","volume":"59","author":"Hergueta","year":"1998","journal-title":"J. Clin. Psychiatry"},{"key":"key\n\t\t\t\t2019010807080459800_bay067-B22","doi-asserted-by":"crossref","first-page":"D940","DOI":"10.1093\/nar\/gkr972","article-title":"Disease Ontology: a backbone for disease semantic integration","volume":"40","author":"Schriml","year":"2012","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019010807080459800_bay067-B23","article-title":"FastQC: a quality control tool for high throughput sequence data","author":"Andrews","year":"2010"},{"key":"key\n\t\t\t\t2019010807080459800_bay067-B24","doi-asserted-by":"crossref","first-page":"357","DOI":"10.1038\/nmeth.3317","article-title":"HISAT: a fast spliced aligner with low memory requirements","volume":"12","author":"Kim","year":"2015","journal-title":"Nat. Methods"},{"key":"key\n\t\t\t\t2019010807080459800_bay067-B25","doi-asserted-by":"crossref","first-page":"290","DOI":"10.1038\/nbt.3122","article-title":"StringTie enables improved reconstruction of a transcriptome from RNA-seq reads","volume":"33","author":"Pertea","year":"2015","journal-title":"Nat. Biotechnol."},{"key":"key\n\t\t\t\t2019010807080459800_bay067-B26","doi-asserted-by":"crossref","first-page":"562","DOI":"10.1038\/nprot.2012.016","article-title":"Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks","volume":"7","author":"Trapnell","year":"2012","journal-title":"Nat. Protoc."},{"key":"key\n\t\t\t\t2019010807080459800_bay067-B27","doi-asserted-by":"crossref","first-page":"331","DOI":"10.1186\/1471-2105-13-331","article-title":"Prediction of novel long non-coding RNAs based on RNA-Seq data of mouse Klf1 knockout study","volume":"13","author":"Sun","year":"2012","journal-title":"BMC Bioinformatics"},{"key":"key\n\t\t\t\t2019010807080459800_bay067-B28","doi-asserted-by":"crossref","first-page":"679","DOI":"10.1038\/nrg.2016.114","article-title":"Detecting circular RNAs: bioinformatic and experimental challenges","volume":"17","author":"Szabo","year":"2016","journal-title":"Nat. Rev. Genet."},{"key":"key\n\t\t\t\t2019010807080459800_bay067-B29","doi-asserted-by":"crossref","first-page":"W677","DOI":"10.1093\/nar\/gki394","article-title":"OrfPredictor: predicting protein-coding regions in EST-derived sequences","volume":"33","author":"Min","year":"2005","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019010807080459800_bay067-B30","doi-asserted-by":"crossref","first-page":"W345","DOI":"10.1093\/nar\/gkm391","article-title":"CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine","volume":"35","author":"Kong","year":"2007","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019010807080459800_bay067-B31","doi-asserted-by":"crossref","first-page":"D635","DOI":"10.1093\/nar\/gkw1104","article-title":"Ensembl 2017","volume":"45","author":"Aken","year":"2017","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019010807080459800_bay067-B32","doi-asserted-by":"crossref","first-page":"12264","DOI":"10.1073\/pnas.1410622111","article-title":"Epigenetic coordination of embryonic heart transcription by dynamically regulated long noncoding RNAs","volume":"111","author":"Matkovich","year":"2014","journal-title":"Proc. Natl. Acad. Sci."},{"key":"key\n\t\t\t\t2019010807080459800_bay067-B33","doi-asserted-by":"crossref","first-page":"1478","DOI":"10.1261\/rna.1951310","article-title":"Genome-wide computational identification and manual annotation of human long noncoding RNA genes","volume":"16","author":"Jia","year":"2010","journal-title":"RNA"},{"key":"key\n\t\t\t\t2019010807080459800_bay067-B34","doi-asserted-by":"crossref","first-page":"889","DOI":"10.1093\/bioinformatics\/btr020","article-title":"Dalliance: interactive genome viewing on the web","volume":"27","author":"Down","year":"2011","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t2019010807080459800_bay067-B35","doi-asserted-by":"crossref","first-page":"199","DOI":"10.1038\/nature21374","article-title":"An atlas of human long non-coding RNAs with accurate 5\u2032 ends","volume":"543","author":"Ramilowski","year":"2017","journal-title":"Nature"},{"key":"key\n\t\t\t\t2019010807080459800_bay067-B36","doi-asserted-by":"crossref","first-page":"bau075","DOI":"10.1093\/database\/bau075","article-title":"Standardized description of scientific evidence using the Evidence Ontology (ECO)","volume":"2014","author":"Chibucos","year":"2014","journal-title":"Database"},{"key":"key\n\t\t\t\t2019010807080459800_bay067-B37","doi-asserted-by":"crossref","first-page":"D54","DOI":"10.1093\/nar\/gki031","article-title":"Entrez Gene: gene-centered information at NCBI","volume":"33","author":"Maglott","year":"2005","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019010807080459800_bay067-B38","article-title":"Systematic review regulatory principles of non-coding RNAs in cardiovascular diseases","author":"Li","year":"2017","journal-title":"Brief. Bioinform"}],"container-title":["Database"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/database\/article-pdf\/doi\/10.1093\/database\/bay067\/27438455\/bay067.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,10,19]],"date-time":"2019-10-19T07:19:14Z","timestamp":1571469554000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/database\/article\/doi\/10.1093\/database\/bay067\/5058131"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2018,1,1]]},"references-count":38,"URL":"https:\/\/doi.org\/10.1093\/database\/bay067","relation":{},"ISSN":["1758-0463"],"issn-type":[{"value":"1758-0463","type":"electronic"}],"subject":[],"published-other":{"date-parts":[[2018]]},"published":{"date-parts":[[2018,1,1]]}}}