{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,4]],"date-time":"2026-04-04T07:15:28Z","timestamp":1775286928745,"version":"3.50.1"},"reference-count":33,"publisher":"Oxford University Press (OUP)","license":[{"start":{"date-parts":[[2018,12,20]],"date-time":"2018-12-20T00:00:00Z","timestamp":1545264000000},"content-version":"vor","delay-in-days":353,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"name":"Thirteenth Five-Year Plan for Key & Research Project of China","award":["2017YFD0600606-09"],"award-info":[{"award-number":["2017YFD0600606-09"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2018,1,1]]},"DOI":"10.1093\/database\/bay131","type":"journal-article","created":{"date-parts":[[2018,11,28]],"date-time":"2018-11-28T07:08:46Z","timestamp":1543388926000},"source":"Crossref","is-referenced-by-count":10,"title":["ConTEdb: a comprehensive database of transposable elements in conifers"],"prefix":"10.1093","volume":"2018","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-0548-8570","authenticated-orcid":false,"given":"Fei","family":"Yi","sequence":"first","affiliation":[{"name":"State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation of State Forestry Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China"},{"name":"College of Biological and Pharmaceutical Sciences, Three Gorges University, Yichang, China"}]},{"given":"Juanjuan","family":"Ling","sequence":"additional","affiliation":[{"name":"State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation of State Forestry Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China"}]},{"given":"Yao","family":"Xiao","sequence":"additional","affiliation":[{"name":"State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation of State Forestry Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China"}]},{"given":"Hanguo","family":"Zhang","sequence":"additional","affiliation":[{"name":"State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, China"}]},{"given":"Fangqun","family":"Ouyang","sequence":"additional","affiliation":[{"name":"State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation of State Forestry Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China"}]},{"given":"Junhui","family":"Wang","sequence":"additional","affiliation":[{"name":"State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation of State Forestry Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China"}]}],"member":"286","published-online":{"date-parts":[[2018,12,17]]},"reference":[{"key":"key\n\t\t\t\t2019012511150360200_ref1","doi-asserted-by":"crossref","first-page":"1626","DOI":"10.1126\/science.1089670","article-title":"Mobile elements: drivers of genome evolution","volume":"303","author":"Kazazian","year":"2004","journal-title":"Science"},{"key":"key\n\t\t\t\t2019012511150360200_ref2","doi-asserted-by":"crossref","first-page":"281","DOI":"10.1016\/S0074-7696(08)61376-5","article-title":"Transposable elements in eukaryotes","volume":"93","author":"Finnegan","year":"1985","journal-title":"Int. Rev. Cytol."},{"key":"key\n\t\t\t\t2019012511150360200_ref3","doi-asserted-by":"crossref","first-page":"973","DOI":"10.1038\/nrg2165","article-title":"A unified classification system for eukaryotic transposable elements","volume":"8","author":"Wicker","year":"2007","journal-title":"Nat. Rev. Genet."},{"key":"key\n\t\t\t\t2019012511150360200_ref4","doi-asserted-by":"crossref","first-page":"383","DOI":"10.1073\/pnas.0509810102","article-title":"Recombination, rearrangement, reshuffling, and divergence in a centromeric region of rice","volume":"103","author":"Ma","year":"2006","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"key\n\t\t\t\t2019012511150360200_ref5","doi-asserted-by":"crossref","first-page":"251","DOI":"10.1023\/A:1006344508454","article-title":"Transposable element contributions to plant gene and genome evolution","volume":"42","author":"Bennetzen","year":"2000","journal-title":"Plant Mol. Biol."},{"key":"key\n\t\t\t\t2019012511150360200_ref6","doi-asserted-by":"crossref","first-page":"102","DOI":"10.1038\/ng1063","article-title":"Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat","volume":"33","author":"Kashkush","year":"2003","journal-title":"Nat. Genet."},{"key":"key\n\t\t\t\t2019012511150360200_ref7","doi-asserted-by":"crossref","first-page":"569","DOI":"10.1038\/nature02953","article-title":"Pack-MULE transposable elements mediate gene evolution in plants","volume":"431","author":"Jiang","year":"2004","journal-title":"Nature"},{"key":"key\n\t\t\t\t2019012511150360200_ref8","doi-asserted-by":"crossref","first-page":"621","DOI":"10.1016\/j.gde.2005.09.010","article-title":"Transposable elements, gene creation and genome rearrangement in flowering plants","volume":"15","author":"Bennetzen","year":"2005","journal-title":"Curr. Opin. Genet. Dev."},{"key":"key\n\t\t\t\t2019012511150360200_ref9","doi-asserted-by":"crossref","first-page":"55","DOI":"10.11646\/phytotaxa.19.1.3","article-title":"A new classification and linear sequence of extant gymnosperms","volume":"19","author":"Christenhusz","year":"2011","journal-title":"Phytotaxa"},{"key":"key\n\t\t\t\t2019012511150360200_ref10","doi-asserted-by":"crossref","first-page":"126","DOI":"10.1515\/sg-2005-0020","article-title":"Evolution of genome size in conifers","volume":"54","author":"Ahuja","year":"2005","journal-title":"Silvae Genet."},{"key":"key\n\t\t\t\t2019012511150360200_ref11","doi-asserted-by":"crossref","first-page":"106","DOI":"10.1186\/1471-2229-9-106","article-title":"Targeted isolation, sequence assembly and characterization of two white spruce","volume":"9","author":"Hamberger","year":"2009","journal-title":"BMC Plant Biol."},{"key":"key\n\t\t\t\t2019012511150360200_ref12","doi-asserted-by":"crossref","first-page":"579","DOI":"10.1038\/nature12211","article-title":"The Norway spruce genome sequence and conifer genome evolution","volume":"497","author":"Nystedt","year":"2013","journal-title":"Nature"},{"key":"key\n\t\t\t\t2019012511150360200_ref13","doi-asserted-by":"crossref","first-page":"1492","DOI":"10.1093\/bioinformatics\/btt178","article-title":"Assembling the 20\u00a0Gb white spruce","volume":"29","author":"Birol","year":"2013","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t2019012511150360200_ref14","doi-asserted-by":"crossref","first-page":"189","DOI":"10.1111\/tpj.12886","article-title":"Improved white spruce","volume":"83","author":"Warren","year":"2015","journal-title":"Plant J."},{"key":"key\n\t\t\t\t2019012511150360200_ref15","doi-asserted-by":"crossref","first-page":"R59","DOI":"10.1186\/gb-2014-15-3-r59","article-title":"Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies","volume":"15","author":"Neale","year":"2014","journal-title":"Genome Biol."},{"key":"key\n\t\t\t\t2019012511150360200_ref16","doi-asserted-by":"crossref","first-page":"875","DOI":"10.1534\/genetics.113.159715","article-title":"Sequencing and assembly of the 22-gb loblolly pine genome","volume":"196","author":"Zimin","year":"2014","journal-title":"Genetics"},{"key":"key\n\t\t\t\t2019012511150360200_ref17","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1093\/gigascience\/gix072","article-title":"An improved assembly of the loblolly pine mega-genome using long-read single-molecule sequencing","volume":"6","author":"Zimin","year":"2017","journal-title":"GigaScience"},{"key":"key\n\t\t\t\t2019012511150360200_ref18","doi-asserted-by":"crossref","first-page":"W265","DOI":"10.1093\/nar\/gkm286","article-title":"LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons","volume":"35","author":"Xu","year":"2007","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019012511150360200_ref19","doi-asserted-by":"crossref","first-page":"e143","DOI":"10.1093\/nar\/gkp752","article-title":"MGEScan-non-LTR: computational identification and classification of autonomous non-LTR retrotransposons in eukaryotic genomes","volume":"37","author":"Rho","year":"2009","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019012511150360200_ref20","doi-asserted-by":"crossref","first-page":"10263","DOI":"10.1073\/pnas.1410068111","article-title":"HelitronScanner uncovers a large overlooked cache of Helitron transposons in many plant genomes","volume":"111","author":"Xiong","year":"2014","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"key\n\t\t\t\t2019012511150360200_ref21","doi-asserted-by":"crossref","first-page":"e199","DOI":"10.1093\/nar\/gkq862","article-title":"MITE-Hunter: a program for discovering miniature inverted-repeat transposable elements from genomic sequences","volume":"38","author":"Han","year":"2010","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019012511150360200_ref22","doi-asserted-by":"crossref","first-page":"i351","DOI":"10.1093\/bioinformatics\/bti1018","article-title":"identification of repeat families in large genomes","volume":"21","author":"Price","year":"2005","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t2019012511150360200_ref23","doi-asserted-by":"crossref","first-page":"i152","DOI":"10.1093\/bioinformatics\/bti1003","article-title":"PILER: identification and classification of genomic repeats","volume":"21","author":"Edgar","year":"2005","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t2019012511150360200_ref24","first-page":"bay024","article-title":"SPTEdb: a database for transposable elements in salicaceous plants","volume":"2018","author":"Yi","year":"2018","journal-title":"Database"},{"key":"key\n\t\t\t\t2019012511150360200_ref25","doi-asserted-by":"crossref","first-page":"684","DOI":"10.3724\/SP.J.1259.2013.00684","article-title":"Characteristics of conifer genome and recent advances in conifer sequence resources mining","volume":"48","author":"Xu","year":"2013","journal-title":"Chin. Bull. Bot."},{"key":"key\n\t\t\t\t2019012511150360200_ref26","doi-asserted-by":"crossref","first-page":"738","DOI":"10.1101\/gr.4825606","article-title":"Widespread genome duplications throughout the history of flowering plants","volume":"16","author":"Cui","year":"2006","journal-title":"Genome Res."},{"key":"key\n\t\t\t\t2019012511150360200_ref27","article-title":"A first look at the large and complex genome of Norway spruce","author":"Ingvarsson","year":"2012"},{"key":"key\n\t\t\t\t2019012511150360200_ref28","doi-asserted-by":"crossref","first-page":"1176","DOI":"10.1093\/oxfordjournals.molbev.a003905","article-title":"Diversity, origin, and distribution of retrotransposons","volume":"18","author":"Friesen","year":"2001","journal-title":"Mol. Biol. Evol."},{"key":"key\n\t\t\t\t2019012511150360200_ref29","doi-asserted-by":"crossref","first-page":"e72439","DOI":"10.1371\/journal.pone.0072439","article-title":"Insights into the loblolly pine genome: characterization of BAC and fosmid sequences","volume":"8","author":"Wegrzyn","year":"2013","journal-title":"PLoS One"},{"key":"key\n\t\t\t\t2019012511150360200_ref30","doi-asserted-by":"crossref","first-page":"1724","DOI":"10.1104\/pp.114.248708","article-title":"Insights into conifer giga-genomes","volume":"166","author":"De La Torre","year":"2014","journal-title":"Plant Physiol."},{"key":"key\n\t\t\t\t2019012511150360200_ref31","doi-asserted-by":"crossref","first-page":"e4332","DOI":"10.1371\/journal.pone.0004332","article-title":"Evolution of genome size and complexity in","volume":"4","author":"Morse","year":"2009","journal-title":"PLoS One"},{"key":"key\n\t\t\t\t2019012511150360200_ref32","doi-asserted-by":"crossref","first-page":"420","DOI":"10.1186\/1471-2164-11-420","article-title":"genome is characterized by diverse and highly diverged repetitive sequences","volume":"11","author":"Kovach","year":"2010","journal-title":"BMC Genomics"},{"key":"key\n\t\t\t\t2019012511150360200_ref33","doi-asserted-by":"crossref","first-page":"553","DOI":"10.1186\/1471-2164-12-553","article-title":"Characterization of the genome of bald cypress","volume":"12","author":"Liu","year":"2011","journal-title":"BMC Genomics"}],"container-title":["Database"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/database\/article-pdf\/doi\/10.1093\/database\/bay131\/27329473\/bay131.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,4,4]],"date-time":"2026-04-04T06:31:43Z","timestamp":1775284303000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/database\/article\/doi\/10.1093\/database\/bay131\/5255192"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2018,1,1]]},"references-count":33,"URL":"https:\/\/doi.org\/10.1093\/database\/bay131","relation":{},"ISSN":["1758-0463"],"issn-type":[{"value":"1758-0463","type":"electronic"}],"subject":[],"published-other":{"date-parts":[[2018]]},"published":{"date-parts":[[2018,1,1]]}}}