{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,29]],"date-time":"2026-07-29T23:40:46Z","timestamp":1785368446880,"version":"3.55.0"},"reference-count":56,"publisher":"Oxford University Press (OUP)","license":[{"start":{"date-parts":[[2019,12,14]],"date-time":"2019-12-14T00:00:00Z","timestamp":1576281600000},"content-version":"vor","delay-in-days":347,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100012226","name":"Fundamental Research Funds for the Central Universities","doi-asserted-by":"publisher","award":["106112016CDJXY290002"],"award-info":[{"award-number":["106112016CDJXY290002"]}],"id":[{"id":"10.13039\/501100012226","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["31200941"],"award-info":[{"award-number":["31200941"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["31772524"],"award-info":[{"award-number":["31772524"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2019,1,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:p>Although the domestic silkworm (Bombyx mori) is an important model and economic animal, there is a lack of comprehensive database for this organism. Here, we developed the silkworm genome informatics database (SGID). It aims to bring together all silkworm-related biological data and provide an interactive platform for gene inquiry and analysis. The function annotation in SGID is thorough and covers 98% of the silkworm genes. The annotation details include function description, Gene Ontology, Kyoto Encyclopedia of Genes and Genomes pathway, subcellular location, transmembrane topology, protein secondary\/tertiary structure, homologous group and transcription factor. SGID provides genome-scale visualization of population genetics test results based on high-depth resequencing data of 158 silkworm samples. It also provides interactive analysis tools of transcriptomic and epigenomic data from 79 NCBI BioProjects. SGID will be extremely useful to silkworm research in the future.<\/jats:p>","DOI":"10.1093\/database\/baz134","type":"journal-article","created":{"date-parts":[[2019,11,4]],"date-time":"2019-11-04T07:07:38Z","timestamp":1572851258000},"source":"Crossref","is-referenced-by-count":14,"title":["SGID: a comprehensive and interactive database of the silkworm"],"prefix":"10.1093","volume":"2019","author":[{"given":"Zhenglin","family":"Zhu","sequence":"first","affiliation":[{"name":"School of Life Sciences, Chongqing University, No.55 Daxuecheng South Rd., Shapingba, Chongqing, 401331, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Zhufen","family":"Guan","sequence":"additional","affiliation":[{"name":"School of Life Sciences, Chongqing University, No.55 Daxuecheng South Rd., Shapingba, Chongqing, 401331, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Gexin","family":"Liu","sequence":"additional","affiliation":[{"name":"School of Life Sciences, Chongqing University, No.55 Daxuecheng South Rd., Shapingba, Chongqing, 401331, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yawang","family":"Wang","sequence":"additional","affiliation":[{"name":"School of Life Sciences, Chongqing University, No.55 Daxuecheng South Rd., Shapingba, Chongqing, 401331, China"},{"name":"Khoury College of Computer Sciences, Northeastern University, 401 Terry Ave N, Seattle, WA, 98109, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ze","family":"Zhang","sequence":"additional","affiliation":[{"name":"School of Life Sciences, Chongqing University, No.55 Daxuecheng South Rd., Shapingba, Chongqing, 401331, China"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2019,12,14]]},"reference":[{"key":"2019121402171641200_ref1","doi-asserted-by":"crossref","first-page":"554","DOI":"10.1002\/ps.4326","article-title":"Sublethal dose of phoxim and Bombyx mori nucleopolyhedrovirus interact to elevate silkworm mortality","volume":"73","author":"Gu","year":"2017","journal-title":"Pest Manag. Sci."},{"key":"2019121402171641200_ref2","doi-asserted-by":"crossref","first-page":"103","DOI":"10.1016\/j.pestbp.2014.12.013","article-title":"Expression profile analysis of silkworm P450 family genes after phoxim induction","volume":"122","author":"Li","year":"2015","journal-title":"Pestic Biochem. Physiol."},{"key":"2019121402171641200_ref3","article-title":"Silkworm: a promising model organism in life science","volume":"17","author":"Meng","year":"2017","journal-title":"J. Insect Sci."},{"key":"2019121402171641200_ref4","doi-asserted-by":"crossref","first-page":"1937","DOI":"10.1126\/science.1102210","article-title":"A draft sequence for the genome of the domesticated silkworm (Bombyx mori)","volume":"306","author":"Xia","year":"2004","journal-title":"Science"},{"key":"2019121402171641200_ref5","doi-asserted-by":"crossref","first-page":"27","DOI":"10.1093\/dnares\/11.1.27","article-title":"The genome sequence of silkworm, Bombyx mori","volume":"11","author":"Mita","year":"2004","journal-title":"DNA Res."},{"key":"2019121402171641200_ref6","doi-asserted-by":"crossref","first-page":"1395","DOI":"10.1261\/rna.029751.111","article-title":"Alternative splicing and trans-splicing events revealed by analysis of the Bombyx mori transcriptome","volume":"18","author":"Shao","year":"2012","journal-title":"RNA"},{"key":"2019121402171641200_ref7","doi-asserted-by":"crossref","first-page":"53","DOI":"10.1016\/j.ibmb.2019.02.002","article-title":"High-quality genome assembly of the silkworm, Bombyx mori","volume":"107","author":"Kawamoto","year":"2019","journal-title":"Insect Biochem. Mol. Biol."},{"key":"2019121402171641200_ref8","doi-asserted-by":"crossref","first-page":"1268","DOI":"10.1038\/s41559-018-0593-4","article-title":"The evolutionary road from wild moth to domestic silkworm","volume":"2","author":"Xiang","year":"2018","journal-title":"Nat. Ecol. Evol."},{"key":"2019121402171641200_ref9","doi-asserted-by":"crossref","first-page":"703","DOI":"10.1111\/imb.12584","article-title":"Transcriptome-wide analysis of N6-methyladenosine uncovers its regulatory role in gene expression in the lepidopteran Bombyx mori","volume":"28","author":"Li","year":"2019","journal-title":"Insect Mol. 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