{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,26]],"date-time":"2026-02-26T20:36:50Z","timestamp":1772138210670,"version":"3.50.1"},"reference-count":18,"publisher":"Oxford University Press (OUP)","license":[{"start":{"date-parts":[[2019,12,23]],"date-time":"2019-12-23T00:00:00Z","timestamp":1577059200000},"content-version":"vor","delay-in-days":356,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"name":"European Union\u2019s Horizon 2020 research and innovation programme","award":["643476"],"award-info":[{"award-number":["643476"]}]},{"DOI":"10.13039\/501100011019","name":"National Research Development and Innovation Office","doi-asserted-by":"publisher","award":["NVKP_16-1-2016-0004"],"award-info":[{"award-number":["NVKP_16-1-2016-0004"]}],"id":[{"id":"10.13039\/501100011019","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2019,1,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:p>Data sharing enables research communities to exchange findings and build upon the knowledge that arises from their discoveries. Areas of public and animal health as well as food safety would benefit from rapid data sharing when it comes to emergencies. However, ethical, regulatory and institutional challenges, as well as lack of suitable platforms which provide an infrastructure for data sharing in structured formats, often lead to data not being shared or at most shared in form of supplementary materials in journal publications. Here, we describe an informatics platform that includes workflows for structured data storage, managing and pre-publication sharing of pathogen sequencing data and its analysis interpretations with relevant stakeholders.<\/jats:p>","DOI":"10.1093\/database\/baz136","type":"journal-article","created":{"date-parts":[[2019,11,13]],"date-time":"2019-11-13T15:09:52Z","timestamp":1573657792000},"source":"Crossref","is-referenced-by-count":30,"title":["The COMPARE Data Hubs"],"prefix":"10.1093","volume":"2019","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-6534-7425","authenticated-orcid":false,"given":"Clara","family":"Amid","sequence":"first","affiliation":[{"name":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]},{"given":"Nima","family":"Pakseresht","sequence":"additional","affiliation":[{"name":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]},{"given":"Nicole","family":"Silvester","sequence":"additional","affiliation":[{"name":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]},{"given":"Suran","family":"Jayathilaka","sequence":"additional","affiliation":[{"name":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]},{"given":"Ole","family":"Lund","sequence":"additional","affiliation":[{"name":"Research Group for Genomic Epidemiology, National Food Institute, Technical University of Denmark, Kongens Lyngby 2800, Denmark"}]},{"given":"Lukasz D","family":"Dynovski","sequence":"additional","affiliation":[{"name":"Research Group for Genomic Epidemiology, National Food Institute, Technical University of Denmark, Kongens Lyngby 2800, Denmark"}]},{"given":"B\u00e1lint \u00c1","family":"Pataki","sequence":"additional","affiliation":[{"name":"Department of Physics of Complex Systems, ELTE E\u00f6tv\u00f6s Lor\u00e1nd University, Budapest 1117, Hungary"},{"name":"Department of Computational Sciences, Wigner Research Centre for Physics of the HAS, Budapest 1121, Hungary"}]},{"given":"D\u00e1vid","family":"Visontai","sequence":"additional","affiliation":[{"name":"Department of Physics of Complex Systems, ELTE E\u00f6tv\u00f6s Lor\u00e1nd University, Budapest 1117, Hungary"},{"name":"Department of Computational Sciences, Wigner Research Centre for Physics of the HAS, Budapest 1121, Hungary"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5897-0240","authenticated-orcid":false,"given":"Basil Britto","family":"Xavier","sequence":"additional","affiliation":[{"name":"Laboratory of Medical Microbiology, Vaccine and Infectious Disease Institute, University of Antwerp, Wilrijk 2610, Belgium"}]},{"given":"Blaise T F","family":"Alako","sequence":"additional","affiliation":[{"name":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]},{"given":"Ariane","family":"Belka","sequence":"additional","affiliation":[{"name":"Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Greifswald 17493, Germany"}]},{"given":"Jose L B","family":"Cisneros","sequence":"additional","affiliation":[{"name":"Research Group for Genomic Epidemiology, National Food Institute, Technical University of Denmark, Kongens Lyngby 2800, Denmark"}]},{"given":"Matthew","family":"Cotten","sequence":"additional","affiliation":[{"name":"Department of Viroscience, Erasmus Medical Center, Rotterdam 3015, Netherlands"}]},{"given":"George B","family":"Haringhuizen","sequence":"additional","affiliation":[{"name":"National Institute for Public Health and the Environment (RIVM), Bilthoven 3720, The Netherlands"}]},{"given":"Peter W","family":"Harrison","sequence":"additional","affiliation":[{"name":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]},{"given":"Dirk","family":"H\u00f6per","sequence":"additional","affiliation":[{"name":"Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Greifswald 17493, Germany"}]},{"given":"Sam","family":"Holt","sequence":"additional","affiliation":[{"name":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]},{"given":"Camilla","family":"Hundahl","sequence":"additional","affiliation":[{"name":"Research Group for Genomic Epidemiology, National Food Institute, Technical University of Denmark, Kongens Lyngby 2800, Denmark"}]},{"given":"Abdulrahman","family":"Hussein","sequence":"additional","affiliation":[{"name":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]},{"given":"Rolf S","family":"Kaas","sequence":"additional","affiliation":[{"name":"Research Group for Genomic Epidemiology, National Food Institute, Technical University of Denmark, Kongens Lyngby 2800, Denmark"}]},{"given":"Xin","family":"Liu","sequence":"additional","affiliation":[{"name":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]},{"given":"Rasko","family":"Leinonen","sequence":"additional","affiliation":[{"name":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]},{"given":"Surbhi","family":"Malhotra-Kumar","sequence":"additional","affiliation":[{"name":"Laboratory of Medical Microbiology, Vaccine and Infectious Disease Institute, University of Antwerp, Wilrijk 2610, Belgium"}]},{"given":"David F","family":"Nieuwenhuijse","sequence":"additional","affiliation":[{"name":"Department of Viroscience, Erasmus Medical Center, Rotterdam 3015, Netherlands"}]},{"given":"Nadim","family":"Rahman","sequence":"additional","affiliation":[{"name":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]},{"given":"Carolina","family":"dos S Ribeiro","sequence":"additional","affiliation":[{"name":"National Institute for Public Health and the Environment (RIVM), Bilthoven 3720, The Netherlands"}]},{"given":"Jeffrey E","family":"Skiby","sequence":"additional","affiliation":[{"name":"Research Group for Genomic Epidemiology, National Food Institute, Technical University of Denmark, Kongens Lyngby 2800, Denmark"}]},{"given":"Dennis","family":"Schmitz","sequence":"additional","affiliation":[{"name":"National Institute for Public Health and the Environment (RIVM), Bilthoven 3720, The Netherlands"},{"name":"Department of Viroscience, Erasmus Medical Center, Rotterdam 3015, Netherlands"}]},{"given":"J\u00f3zsef","family":"St\u00e9ger","sequence":"additional","affiliation":[{"name":"Department of Physics of Complex Systems, ELTE E\u00f6tv\u00f6s Lor\u00e1nd University, Budapest 1117, Hungary"},{"name":"Department of Computational Sciences, Wigner Research Centre for Physics of the HAS, Budapest 1121, Hungary"}]},{"given":"J\u00e1nos M","family":"Szalai-Gindl","sequence":"additional","affiliation":[{"name":"Department of Physics of Complex Systems, ELTE E\u00f6tv\u00f6s Lor\u00e1nd University, Budapest 1117, Hungary"},{"name":"Department of Computational Sciences, Wigner Research Centre for Physics of the HAS, Budapest 1121, Hungary"}]},{"given":"Martin C F","family":"Thomsen","sequence":"additional","affiliation":[{"name":"Research Group for Genomic Epidemiology, National Food Institute, Technical University of Denmark, Kongens Lyngby 2800, Denmark"}]},{"given":"Simone M","family":"Cacci\u00f2","sequence":"additional","affiliation":[{"name":"European Union Reference Laboratory for Parasites, Istituto Superiore di Sanit\u00e0 (ISS), Rome 00161, Italy"}]},{"given":"Istv\u00e1n","family":"Csabai","sequence":"additional","affiliation":[{"name":"Department of Physics of Complex Systems, ELTE E\u00f6tv\u00f6s Lor\u00e1nd University, Budapest 1117, Hungary"},{"name":"Department of Computational Sciences, Wigner Research Centre for Physics of the HAS, Budapest 1121, Hungary"}]},{"given":"Annelies","family":"Kroneman","sequence":"additional","affiliation":[{"name":"National Institute for Public Health and the Environment (RIVM), Bilthoven 3720, The Netherlands"}]},{"given":"Marion","family":"Koopmans","sequence":"additional","affiliation":[{"name":"Department of Viroscience, Erasmus Medical Center, Rotterdam 3015, Netherlands"}]},{"given":"Frank","family":"Aarestrup","sequence":"additional","affiliation":[{"name":"Research Group for Genomic Epidemiology, 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